Trinickia caryophylli: U0034_15085
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Entry
U0034_15085 CDS
T09722
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tcar
Trinickia caryophylli
Pathway
tcar03030
DNA replication
tcar03430
Mismatch repair
tcar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U0034_15085 (dnaE)
03430 Mismatch repair
U0034_15085 (dnaE)
03440 Homologous recombination
U0034_15085 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcar03032
]
U0034_15085 (dnaE)
03400 DNA repair and recombination proteins [BR:
tcar03400
]
U0034_15085 (dnaE)
Enzymes [BR:
tcar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
U0034_15085 (dnaE)
DNA replication proteins [BR:
tcar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
U0034_15085 (dnaE)
DNA repair and recombination proteins [BR:
tcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
U0034_15085 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
WQE11080
LinkDB
All DBs
Position
1:3338815..3342405
Genome browser
AA seq
1196 aa
AA seq
DB search
MPDPRFVHLRLHSEFSIADGIVRLDDAVKAAADDGQGALALTDLANAFGLVRFYKEARGK
GVKPIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLTKSWLTNQYRGRAEVEVEW
LAGPLREGLIALSGAQQGDVGLALAAGNKEAARRHATRWSELFPNAFYIELQRCGQPGTE
LYVQEAVELAAALKLPVVATHPVQFMTSDEYTAHEARVCISEGDILANPRRQKRFTTEQH
FRTQEEMAALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLERRLAELYPDQAKREAERESYYKRLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYTFTDGVAKLIPFKPGKHVTIADAMK
EEPLLQERYDKEDEVNQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDPASFS
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGRET
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAQHRE
IFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKVHHPAEFMAA
NLTLAMDDTDKVKILFDDCVSPINKLAVLPPDINLSHYRFEPVAEPDGTRSRTIRYGLGA
VKGSGQSAIEEILRAREEKPFSDLFDFCQRIDRRVVNRRTIEALIRAGAFDALHANRAQL
IASVPLAMEAAEQAAANALQAGLFDMGDDSSSQGHELVDEPAWPEKRKLQEEKTALGFYL
SGHLFDAYKDEVRRFVRQKIADLKEGRDKLVAGIIVSLRTQMTQRGKMLIAAIDDGTGQC
ELTVFNEQYEANRALFKEDELLVVQGQARNDAFTGGIRFTVESVMDLERARSRYAQAVKV
SMNGNADATALRRVLEAYCAPPAAAQEAQAAAPAGGRNGNARAGFGGEGGRPRAASQAFS
QAFSQAPNGLAVQIAYCNDRARGEVRLGDAWRVRPSDDLLTALRSEFAASMVEIVY
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgccagatccccgcttcgtccatctccgcctccactctgaattctcgattgccgacggc
atcgtgcgcctcgacgacgccgtcaaggcagccgctgacgacggtcagggcgcgcttgcg
ctgaccgacctcgcgaacgcattcggactcgttcgcttttacaaggaagcccgcggcaag
ggcgtcaagccgatcgccggctgcgatgtctggatcacgaatccggatgaccgcgacaag
ccttcgcggctgctgttgctcgtgaaggaccggcgcggctacctcaatctgtgcgagctt
ttgacgaagtcctggctaacgaaccagtaccgcggtcgcgccgaagtggaggtcgaatgg
ctcgccgggccgctgcgcgaggggcttatcgcgctgtctggcgcacagcagggcgatgtc
gggctggcgctggccgccggcaacaaggaagctgcgcgccgccatgcgacgcgctggtcc
gagctgttcccgaacgcgttttacatcgagctgcaacgttgcggccagccagggaccgaa
ctctacgtgcaggaagccgtggagctcgccgccgcgctgaagctgcccgtcgtcgccacg
catccggtgcagttcatgacgagcgacgagtacacggcccacgaggcgcgcgtgtgcatt
tccgagggcgacattctcgcgaatccgcgtcggcaaaagcgcttcaccaccgagcagcat
ttccgcacgcaagaggagatggcggcgctctttgccgacattccgtccgcactcgcgaac
acggtcgaaatcgcgaagcgctgcaatctgacgctcgagctcggcaaaccgaagctgccg
ctctttccgacgcctgacggcatgtcgctcgacgattacctcgtgcagttgtcgaaggaa
ggcctcgagcgccggctcgcggaactctatcccgaccaggcgaagcgcgaggccgagcgc
gagagctactacaagcggctcgagttcgagtgcggcacgatcatcaagatgggctttccc
ggctacttcctgatcgtggcggacttcatcaactgggcgaagaacaacggtgtgccggtg
gggcccgggcggggctcgggcgctggctcgctcgtcgcctacgcgctcggcatcacggac
ctcgatccgttgcgctacaacctcctgttcgagcgttttctgaatcccgagcgcgtgtcg
atgcccgacttcgacatcgatttctgccagcatggccgcgatcgcgtgatccagtatgtg
aaggaaaagtacggcgcggatgccgtctctcagatcgcgacgttcggcacgatggcggcc
aaggccgcggtgcgcgacatcgggcgcgtgctcgatctgggctatacgttcaccgacggc
gtggcgaagctgattccgttcaagcccggcaagcacgtgacgattgccgacgcgatgaag
gaggagccgctcctgcaggagcggtatgacaaggaggacgaggtcaaccaactgctcgat
ctcgcccagcgggtcgagggcctcacgcgcaacgtcgggatgcacgcgggcggcgtgctg
atcgcccccggcaagctcaccgatttctgcccgctttacacgcagggtgacgacggcggg
gtcgtgagccagtacgacaaggatgacgtcgaagcggtcggcctcgtgaagttcgacttt
ctgggtctgacgacgctcacgattctcgactgggccgagcgttacattcgccggctcgat
ccgtcgaaggccgactggtcgctcgcgcaggtgccgctcgacgatcccgcctcgttctcg
atcctgaagaaggccaatacggttgccgtgttccagctggaaagccgcggcatgcagggc
atgctcaaggacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtcgcgctctat
cgcccgggcccgatggatctgatcccgagcttttgcgcgcgcaagcacgggcgcgagacg
gtggagtatcccgatccgcgcgtggagcctgttctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcc
gacctcttgcgccgcgcgatgggcaagaaaaaggccgaggagatggcccagcaccgcgag
atctttgccgaaggcgcggcgaagaacggtcttacgcgggagaagtccgacgagatcttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcggcatatgcg
ctgctcgcctactacacggcgtggcttaaggttcaccacccggccgaattcatggcggcc
aacctgacgctcgcaatggacgacaccgacaaggtgaagatccttttcgacgattgcgtc
agcccgatcaacaaacttgcggtcctgccgcccgacatcaacctctcccactatcgcttc
gagcccgtcgccgagccggacggcacacgctcgcgcacgatccgctacggtctgggcgcg
gtgaagggcagcggccagagcgcgatcgaggagatcctgcgcgcgcgcgaggaaaagccg
ttttccgatcttttcgacttctgtcagcgaatcgaccggcgcgtcgtcaatcgccgcacg
atcgaagcgctcattcgcgcgggtgcgttcgacgcgctgcacgcgaaccgggcgcagctc
atcgcgtcggtgccgctcgcgatggaggctgcagagcaggcggccgcgaatgcgctccag
gcggggctcttcgatatgggcgacgattcgtcgtcgcagggccatgaacttgtcgacgag
cccgcgtggcccgaaaagcgcaagctgcaggaagaaaaaacggcgctcggcttttacctc
tcgggccatctgttcgatgcgtacaaggacgaggtgcgcaggttcgtgcgccagaagatc
gccgatctgaaagaaggtcgcgacaaactcgtggccgggatcattgtgtcgctgcgcacc
cagatgactcagcgcggcaaaatgctgattgcggccatcgacgacggcaccggccagtgc
gaactcaccgtgttcaacgagcaatacgaggcgaaccgggcgctcttcaaggaagacgag
ttgctcgtcgtgcaagggcaggcgcgcaacgatgcattcacgggcggcattcgcttcact
gtcgaatcggtgatggatctcgagcgcgcgcgcagccgctatgcgcaggccgtcaaggtg
agcatgaatggcaatgccgatgcgacggcgttgcgccgcgtgctcgaagcgtactgtgcg
ccgcccgccgccgcgcaggaagcgcaggccgcggcgccggctggcggccgcaacggcaac
gcgcgtgcaggcttcggcggggagggcggcaggccgcgcgccgcttctcaggcattttct
caggcattttcgcaagcacccaacgggctggcggtccagatcgcttactgcaacgatcgc
gcgcggggcgaagtgcgcctcggcgacgcctggcgcgtgcgcccgagcgacgatttgctc
accgcgctgcgcagcgagttcgccgcaagcatggtggagatcgtctactga
DBGET
integrated database retrieval system
