Trinickia caryophylli: U0034_15125
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Entry
U0034_15125 CDS
T09722
Symbol
msbA
Name
(GenBank) lipid A export permease/ATP-binding protein MsbA
KO
K11085
ATP-binding cassette, subfamily B, bacterial MsbA [EC:
7.5.2.6
]
Organism
tcar
Trinickia caryophylli
Pathway
tcar02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
U0034_15125 (msbA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tcar02000
]
U0034_15125 (msbA)
Enzymes [BR:
tcar01000
]
7. Translocases
7.5 Catalysing the translocation of carbohydrates and their derivatives
7.5.2 Linked to the hydrolysis of a nucleoside triphosphate
7.5.2.6 ABC-type lipid A-core oligosaccharide transporter
U0034_15125 (msbA)
Transporters [BR:
tcar02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
U0034_15125 (msbA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_16
AAA
DEAD
nSTAND1
RsgA_GTPase
AAA_22
AAA_29
AAA_25
ABC_ATPase
AAA_24
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
WQE11087
LinkDB
All DBs
Position
1:3350887..3352668
Genome browser
AA seq
593 aa
AA seq
DB search
MEKGNTASGTKGPKQRTTRSVFKRLWPFVKPNLWVVILAVATMGVSSATDAGIPALLKPL
LDHGFGAKANISAKWLVPLAVIGLALVRGTAQYASGYLLSYVSNRILLQLRLTMFERMIH
TGATFFQRETASTVINAIVFEVNQILGVLTGVMVTLVRDSLTVFFLLGYLFYLNWRLTLI
VAVILPGIGWIVSKINRRLRRLGREQQTLTNELSYIVEETVGGYKVVKVHNGEQYEIDRF
AQMSKRLRGYAMRMAVSGGLAQPLTQFLASIALAIVITIAVVQSANDQTTVGGFVAFVTS
MLLIISPLKHLIDVNQPLQRGVTAAELIFGLIDEPPEPKGGSRPLPRARGEIEFRDVSFT
YTTSERRILDDVSLRVAPGEMVALAGPSGSGKTSLVNLLPRFFDPSGGTILVDGVPIDEY
DVHALRSQIAMVSQDVVLFNDTMAANVAYGQTPDRDRVQAALRAANLADVVASLPDGIDT
QIGGNGMRLSGGQRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETLMEGRTT
LVIAHRLSTIERADRILVMEAGHIVEHGSHSELLRRDGLYAHLHRIQYQQQAA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaaggaaacaccgcgagcgggacgaagggcccgaagcagcgcaccacccgttcg
gtattcaagcgcctatggcctttcgtcaaacccaatctctgggtggtcattctggccgtg
gcgacgatgggcgtgagttcggccaccgacgcggggatccccgcgctgctcaagccgttg
ctggaccatgggttcggcgcgaaggcgaatatcagcgcgaaatggctcgtgccgctcgcc
gtgatcgggctcgcactcgtgcgcgggactgcacagtatgcgtcgggctatctgctctcg
tacgtgtcgaaccgcatcctgctgcagttgcggctcacgatgttcgaacgcatgatccat
acgggcgccaccttctttcagcgcgagacggcgagcaccgtcatcaatgcgatcgttttc
gaggtcaatcagatcctgggcgtgctgacgggcgtcatggtcacgctcgtgcgcgattcg
ttgaccgtctttttcctgctcggctatctcttttacctgaactggcgcctgacgctgatc
gtcgccgtgatcctgcccggaatcgggtggatcgtgagcaagatcaaccggcgcctgcgc
cggctcggccgcgagcaacagacgctcacgaacgagctttcctatatcgtcgaggagacg
gtgggcggctataaggtcgtgaaggtccacaacggcgagcaatacgagatcgaccgtttc
gcgcagatgagcaagcggttgagaggctatgcgatgcgcatggcggtgtcgggggggctc
gcgcagccgctgacgcagtttctcgcttcgatcgcgctcgcgatcgtcatcacgatcgcc
gtcgtgcaatcggcgaacgatcagaccaccgtgggtggattcgtggccttcgtcacctcg
atgttgctgatcatctcgccgctcaagcacctgatcgacgtgaatcagccgctgcagcgc
ggcgtcacggccgccgaactcattttcggcctcatcgacgagccgcccgagcccaagggc
ggcagccgtccgttgccgcgcgctcgcggcgagatcgagttccgcgacgtgtcgttcacc
tataccacgagcgagcggcgtattctcgacgacgtttcactgcgagtagcccccggggag
atggtcgcgcttgccggaccttcgggcagcggcaagacctcgctcgtgaacctgcttccg
cgctttttcgatccgagcggcggcacgatattggtcgacggcgtgcccatcgacgagtac
gacgtccatgcgctgcgcagccagattgcgatggtgagccaggatgtcgtgctcttcaac
gatacgatggcggcgaacgttgcctacggccagacgcccgatcgcgaccgcgttcaggcc
gcgttgcgcgcggcgaatctggccgatgtcgtggcatcgctgcctgacggcatcgatacg
caaatcggcggcaacgggatgcgcctgtccggcggacaacgtcagcgtctcgccattgca
cgcgcgatctacaaggacgccccgattctgattctggacgaggccacctcggcgctcgac
tcggaatccgagcgccatgtccaggccgcgctcgagacgttgatggaagggcgcacgacg
ctcgtcatcgctcaccgtctttcgacgatcgaacgtgccgaccgcattctcgtcatggag
gcggggcatatcgtcgagcatggcagccacagcgaattgctgcgccgcgacgggctctac
gcccacctgcaccggatccaatatcaacagcaggccgcctga
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