Trinickia caryophylli: U0034_15405
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Entry
U0034_15405 CDS
T09722
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tcar
Trinickia caryophylli
Pathway
tcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0034_15405 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcar03019
]
U0034_15405 (pnp)
03016 Transfer RNA biogenesis [BR:
tcar03016
]
U0034_15405 (pnp)
Enzymes [BR:
tcar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
U0034_15405 (pnp)
Messenger RNA biogenesis [BR:
tcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U0034_15405 (pnp)
Transfer RNA biogenesis [BR:
tcar03016
]
Prokaryotic type
tRNA degradation factors
U0034_15405 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
Methyltransf_FA
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
WQE11138
LinkDB
All DBs
Position
1:3408067..3410217
Genome browser
AA seq
716 aa
AA seq
DB search
MSMFNKVVKEFKWGQHTVRLETGEIARQATGAVIVDVEDTVVLATVVGAKTAKPGQDFFP
LTVDYIEKTYSAGKIPGGFFRREGRPSELETLTSRLIDRPLRPLFPEGFYNEVQVVIHVL
SVNPEIPADVPAMIGASAALAVSGLPFHGPVGAARVAYVNNEYVLNPTRSQMKDSRLELI
VAGTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVRDGGKPEWDWQPAAK
NEALIARVTDLAYGDLTAAYQIRNKQERSTKLKEIYAATGAKLDEEALAAGTVPADKATI
GNILFDLEAKIVRSQILNGEARIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAA
CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTADGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LGKMTEAVAGANTELSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTSSEGMAEAKRRIEAITAEIEVGQIYEGSVLKLLEFGAIVNILPGKDGLLHISE
IANERIKDIKDYLTEGQHVRVKVISTDEKGRVRLSSKALLNDAASGAGQPEQAPQQ
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgttcaataaagtcgtcaaagagtttaagtgggggcagcataccgttcgcctc
gagacgggcgagatcgcccgccaggcgacaggcgccgtcatcgtcgacgtggaagacacc
gtcgtgctcgccaccgtggtcggtgcgaagacggccaagcccggtcaggattttttcccg
ttgaccgtcgattacatcgaaaagacctactcggccggcaagatcccgggcggcttcttc
cgccgcgagggccgcccgtccgaactcgagacgctgacctcgcgcctcatcgaccgcccg
ctgcgtccgcttttccccgaaggcttctacaacgaagtgcaggtcgtcatccacgtgctg
tcggtcaaccccgagattccggccgacgtgccggcgatgatcggcgcgtcggcggcgctt
gccgtctccggcctgccgttccacggcccggtgggtgccgcgcgcgttgcctacgtcaat
aacgagtacgtgctgaaccccacgcgctcgcagatgaaggattcgcgtctcgaactcatc
gttgcgggcaccgagcgtgccgtgctgatggtcgagtcggaagccgaccaactgccggaa
gacgtgatgcttggcgccgtcgtgttcggccatgagcagatgcaaacggcgatcgacgcg
atccacgaactcgtgcgcgatggcggcaagcccgaatgggactggcagcccgccgcgaag
aacgaggcgctgatcgcgcgcgtgacggatcttgcgtacggtgacctgacggctgcctac
cagatccgcaacaagcaggagcgctcgacgaagctcaaggagatctacgccgcgacgggc
gcaaagctcgacgaggaagcgcttgccgccggtacggtgcccgcagacaaggcgacgatc
ggcaatatcctgttcgatctcgaagcgaagatcgtccgcagccagatcctgaacggcgag
gctcgcatcgacggccgcgacacgcgcacggtgcgcccgatcgagatccgtaccggcgtg
ctgccgcgcacgcacggctcggcgctcttcacgcgcggcgagacgcaggcgctcgtcgtg
gcgacgctcggcacgaagggagacgagcagatcatcgacgcgctcgaaggcgagtaccgc
gagcgcttcatgctccactacaacatgccgccgttcgccaccggcgaaacggggcgcgtc
ggctcgccgaagcgccgcgagatcggccatggccgcctcgccaagcgtgcgctggccgcc
tgcctgccgagcgctgacgaattcggctactcgattcgcgtcgtgtcggaaatcaccgag
tcgaacggctcgtcgtcgatggcgtcggtttgcggcggctgtctcgcgctgatggacgcc
ggcgtgccgatgaaggcgcacgtggccggtatcgcgatgggtctcattctcgaaggcaac
aagttcgcagtgctgaccgacatcctcggcgacgaggaccacctcggcgacatggacttc
aaggtggccggtacggcggacggcgtgacggccctgcagatggacatcaagatccagggg
atcacgaaggaaatcatgcaggtcgcgctcgcgcaggcgaaggaaggccgcatgcacatc
ctcggcaagatgacggaagcggttgccggcgcaaacaccgaactctccgagttcgcgccg
cgaatgatcacgatcaagatcaaccccgagaagatccgcgacgtgatcggcaagggcggg
tcggtcatccgcgcgttgaccgaagaaacgggcacgacgatcgatatctccgacgacggc
gtggtgacgatcgcgagcacgagcagcgaaggcatggccgaggcaaagcgccgcatcgag
gcgatcacggccgagatcgaggtgggccagatctacgaaggctccgtgctcaagctgctc
gagttcggtgcgatcgtgaacatcctgccgggcaaggatggtctgctgcatatttccgag
atcgcgaacgagcgcatcaaggacatcaaggactatctgaccgaaggccagcacgtccgg
gtgaaggtcatctcgaccgacgagaagggccgtgtgcgcctgtcgtcgaaggcgctgctg
aacgacgcggcgtccggcgcggggcagcccgagcaggcgccgcagcagtga
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