Trinickia caryophylli: U0034_15670
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Entry
U0034_15670 CDS
T09722
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
tcar
Trinickia caryophylli
Pathway
tcar03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
U0034_15670 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcar03019
]
U0034_15670 (orn)
03009 Ribosome biogenesis [BR:
tcar03009
]
U0034_15670 (orn)
Messenger RNA biogenesis [BR:
tcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U0034_15670 (orn)
Ribosome biogenesis [BR:
tcar03009
]
Eukaryotic type
Pre-60S particles
RNases
U0034_15670 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Ribosomal_L10
Motif
Other DBs
NCBI-ProteinID:
WQE11183
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All DBs
Position
1:3458718..3459326
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AA seq
202 aa
AA seq
DB search
MTDTLEPVGEPTLIRSEMNLVWLDMEMTGLEPDTDRIIEIAVVVTNSTLDRVVEGPVLAI
HQSDETLGKMDDWNKNTHGRSGLIDRVRASTVTEAQAAEQIRTFLGQYVPPGKSPMCGNS
ICQDRRFMARWMPELEKFFHYRNLDVSTLKELCRRWQPAVYKGFQKRAMHTALADIHESI
DELKYYRQHFLVVAPSAAVEGA
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atgactgacactctcgaacccgtcggcgagccgacgctcatccgcagcgagatgaatctc
gtctggctcgatatggaaatgacgggactcgagcccgacacggaccgcattatcgagatt
gccgtcgtggtcacgaattcgacgctcgacagggtggtggagggccccgtgctcgccatt
catcagagcgacgagacgctcggaaaaatggacgattggaacaagaacacgcacgggcgc
tccggcctcatcgatcgtgtgcgggcttcgaccgtgaccgaggcacaggccgccgagcag
attcgcacgtttctcggccagtacgtgccgcccgggaagtcgccgatgtgcggtaactcc
atttgccaggatcggcgcttcatggcgcgctggatgcccgagctcgagaagttcttccac
tatcgcaacctcgacgtcagcacgctcaaggagctctgccgccgctggcagccagccgtc
tacaagggcttccaaaagcgcgcgatgcataccgcgctcgccgacattcacgaatcgatc
gacgaactcaagtactaccggcagcactttctcgtcgtagcgccgagcgcagcggtcgag
ggcgcctga
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