Trinickia caryophylli: U0034_16720
Help
Entry
U0034_16720 CDS
T09722
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
tcar
Trinickia caryophylli
Pathway
tcar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
U0034_16720 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcar03400
]
U0034_16720 (recB)
Enzymes [BR:
tcar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
U0034_16720 (recB)
DNA repair and recombination proteins [BR:
tcar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
U0034_16720 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WQE11375
LinkDB
All DBs
Position
1:3701350..3705129
Genome browser
AA seq
1259 aa
AA seq
DB search
MNGERHRPTAAALAAPVELDVFGCRLDGVNQIEASAGTGKTWNICALYVRLMLERDLNAD
QILVVTFTKAATAELHERIRSRLAELERAIERRDRDGDPFIARLFETVLADADDVALELA
AKRVRRALSTFDQAAIHTIHAFCQRALQEAPFAAGMPFSFEMQADDASLRFELAADFWRT
RVEPEAAAHPAFAAWLVERGAGPAALDAQLAKRLKKPLARVRWGAAGASSPEAEAQADEV
DAQARFDEACALWHAEREAIVQLLGQAQAVLSRTTHKPETVAAALDAWDRYFAQGDCHAA
PPRAALKLTAAALAKATKVKCTPPEHPFFVLAQTLAAASESAEAAHRMRWLVLLAQWLDE
APAALRAMKRTRRVSSFDDLLANLHDALVAHPWLAEALRARYPAALIDEFQDTDPLQFAI
FERIFAKSGQAPAPLFLVGDPKQAIYSFRAADLHTYLAARHAASARYTLAVNQRSTAPLV
EACNRIFGANPQAFVLDGLDYQPVRAGTRIRGAFVDERMPARHGVAEGSFNVWMLPSGED
ALVKRDAQRQAAEACAAEIAGLMRGAREGTVRVGAAPLAPADIAVLVRTHKQGSLVKHVL
AAWGIGSVELAQASVFETIDAEQLERVLIAIDTPGDLRRLRAALAADWFGLDAAALWRLQ
ALTDEVPATHEDDATAWVERFSRYRSLWHERGFAAMWRTLMRELGIGPKLIAGEDGERRL
TDVNHLAELVAARDAATPGLAPTLRWLAAQRTQGGGEEAQLRLESDRDLVQIVTVHKSKG
LEYAVVFCPFLNDGARAAGSSPALPDACEYHEAADAPGATVTVLHYGCEGETAERAAREA
AREEAAERARLVYVALTRAVHRCYLVAGSYLSSRSTKESRRSVLNWLVAGDERGFDAWSD
DPPEEAVIARQWEALTSPGGPIAIGPLPMPVTRAPLARESARGRRLAARMSRIALAESWR
IASFSSLASAALAHAPLVAEEEPRPDHDALAAPPPEPALPAVAAGALPPAAAQADDILAF
PRGAAAGECLHRLFELADFANPDTWPAAIARALQERPVAADAATARLMPAMMGRVVADVV
GTELAPGLTLAEVDPERRFVEWPFLFAAPALALPALRRLLTAHGYPDVALEPGMLAGFVK
GFVDMIVEHRGRYWIIDWKSNHLGMNAADYAAGPLEAAMTAHAYHLQGLLYTLALHRYLK
VRKRGYDYDAHVGGYLYVFLRGVRPGWHDGGMPAGVHRRTPSRALIEALDRLMAGEARA
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgaacggcaccggcccacggccgcggcgctcgccgcacctgtcgagctcgac
gtgttcggctgccggctcgacggcgtgaatcagatcgaggcgtccgccggcacgggcaag
acctggaacatctgtgcgctctatgtgcgcttgatgctcgagcgcgatttgaacgcggat
cagatcctcgtcgtgacgttcacgaaggcggcgacggcggagctgcacgagcggatccgc
tcgcggctcgccgagctcgagcgcgccatcgagcggcgcgatcgcgacggcgacccgttt
atcgcgcgccttttcgaaactgttcttgccgatgccgacgacgtggcgctcgagctggcc
gccaagcgtgtgcgccgcgcgctctcgacgttcgatcaggccgcgatccacacgatccac
gcgttttgccagcgtgcgctgcaggaggcgccgtttgcagcggggatgccgttctcgttc
gagatgcaggccgatgacgcgagcctgcgcttcgaactcgcagcggatttctggcgcacg
cgcgtcgagccggaggccgcggcccatccggcgttcgcggcgtggctcgtcgagcgcggc
gcggggccggccgcgctcgatgcgcaactcgcaaagcgtctcaagaagccgcttgcacgg
gtgcgctggggagcggcgggcgcttcgtctcccgaagccgaggcgcaggccgacgaggtc
gatgcgcaagcgcgcttcgacgaagcctgcgcactgtggcatgccgagcgcgaggcgatc
gtacaactgctcgggcaagcccaggcggtgctttcgcgcacgacccacaagcccgagaca
gtggccgcggcgctcgatgcctgggaccgctacttcgcgcagggagattgccacgcggcg
ccgccgcgcgccgcgctcaagctgaccgctgccgcactcgcgaaggcgacgaaggtgaaa
tgcacgccgcccgagcatccgtttttcgtgctggcgcagacgctcgcggccgcgagcgaa
tcggccgaggctgcgcaccgcatgcgctggctcgtgctgctggcacagtggctcgacgaa
gcgccggccgcgttgcgcgcgatgaagcgcacgcgccgcgtgagctcgttcgacgatctg
ctcgcgaacctgcacgatgcactcgttgcgcacccgtggctggccgaagcgctgcgcgcg
cgttatccggctgcgctcatcgacgaatttcaggacaccgatccgctgcagttcgcgatc
ttcgaacggatcttcgccaagagcgggcaggcgccggcgccgctctttctcgtcggcgat
ccgaagcaggcgatctacagctttcgcgcggcggatctgcacacgtatctggccgcgcgt
catgccgcgagcgcccgctatacgctcgcagtcaatcagcgttcgacggcaccgctcgtc
gaggcctgcaaccgcattttcggcgccaatccgcaggccttcgtgctcgacgggctcgac
tatcagcccgtgcgtgccggtacgcgcatccgcggcgcgttcgtcgacgagcgcatgccg
gccaggcacggcgtggctgagggctcgttcaacgtctggatgctgccttccggcgaagat
gcgctcgtcaagcgcgacgcgcagcggcaggccgccgaggcgtgcgcggcggagatcgcc
ggcctcatgcgcggcgcgcgcgagggcacggtgcgcgtgggcgccgcgccgctcgcgccc
gcggacatcgccgtgctcgtgcgcacgcacaagcaaggcagcctcgtgaagcacgtgctg
gcggcatggggcatcggcagcgtcgaactggcgcaggcgtcggtcttcgagacgatcgac
gccgagcagctcgagcgcgtgctgatcgcgatcgatacgcccggcgatctgcgccgcctg
cgcgcggcgctcgcggccgactggttcggtctcgacgccgccgcgctctggcgcctgcag
gcgctgaccgacgaggtaccggccacgcacgaggacgacgccacggcctgggtcgagcgc
ttctcgcgctatcggtcgctgtggcacgagcgcggatttgccgcgatgtggcgcacgctc
atgcgcgagctcggcatcgggccgaagctcattgccggcgaagacggcgagcggcggctg
accgacgtcaaccatttggccgaactcgtcgccgcgcgcgatgcggcgacgccgggtctc
gcgccgacgctgcgctggctcgccgcgcagcggactcagggcggcggggaggaggcgcag
ttgcgcctcgagtccgatcgcgatctcgtgcagatcgtgaccgtgcataaatcgaagggg
ctcgagtacgccgtcgtcttctgcccgttcctcaacgacggggcgcgggccgccggatcg
tcgccggcgttgcccgacgcctgcgaataccacgaagcggcggatgcgcccggcgcgacc
gtgacagtgctccactacggttgcgagggcgagacggccgagcgtgccgcgcgggaggcg
gcgcgcgaggaggcggcggagcgggcgcggctcgtgtacgttgcgctcacgcgtgccgtt
catcgttgctatctggtggccggcagctatctgtcttcgcgctcgaccaaggagtcgcgc
cgcagtgtgctcaattggctcgtggcgggcgacgaacgcggcttcgacgcatggagcgac
gatccgccggaggaggccgtgatcgcacgccaatgggaggcattgacctcgcccggtggc
ccgatcgcaatcggaccgttgccgatgccggtcacccgtgcgccgctcgcgcgcgaatcg
gcgcggggacgccgccttgccgcacgcatgagccgaatcgcgctcgcggaaagctggcgc
atcgcgagcttcagctcgctcgcttcggcggcgctcgcgcacgcgccactcgtggccgag
gaggagccgcgccccgatcacgatgcgctcgcggcaccgcctccggagccggcgttacca
gccgttgcggctggggcattgccgcccgcggcggcgcaggccgacgacattctcgccttc
ccgcgcggggcggcggcgggcgagtgcctgcatcggctgttcgagttggccgatttcgcg
aacccggacacgtggcccgcggctatcgcgcgtgcgctgcaggagcggccggtggccgcg
gatgcggcgaccgcccggttgatgcccgccatgatgggccgggtcgtggccgacgtcgtt
gggaccgaactcgctcccgggctgacgctcgccgaggtcgaccccgagcgccggttcgtc
gaatggccgttcctcttcgcggcgccggcgctggcgttgcccgcgctgcgacgccttttg
acggcgcatggctatcccgacgtcgcgctcgagccgggcatgcttgcgggcttcgtcaag
ggattcgtcgacatgatcgtcgagcaccgcggccgctactggatcatcgactggaagtcg
aaccatctcggcatgaacgcagccgattatgcggcgggcccgctcgaggccgcgatgacg
gcgcatgcctaccacctgcagggcctgctctatacgctcgcgctgcaccgatatctgaag
gtgcgcaaacgcggctacgactacgacgcgcatgtgggcggctacctgtacgtgttcctg
cgcggagtgcgcccgggctggcacgacggtggcatgccggccggtgtacaccggcgcacg
ccgtcgcgcgcgctgatcgaagcgctcgaccgtttgatggcgggggaggcacgggcatga
DBGET
integrated database retrieval system
