KEGG   Trinickia caryophylli: U0034_17255
Entry
U0034_17255       CDS       T09722                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
tcar  Trinickia caryophylli
Pathway
tcar03420  Nucleotide excision repair
tcar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tcar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    U0034_17255
   03430 Mismatch repair
    U0034_17255
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tcar03400]
    U0034_17255
Enzymes [BR:tcar01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     U0034_17255
DNA repair and recombination proteins [BR:tcar03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     U0034_17255
   MMR (mismatch excision repair)
    Other MMR factors
     U0034_17255
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor AAA_12 AAA_30 Viral_helicase1 AAA_11
Other DBs
NCBI-ProteinID: WQE11477
LinkDB
Position
1:3813610..3815979
AA seq 789 aa
MPDLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQQLASPATVLAVTF
TNKAAREMMARLSALLPIDTRGMWIGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLSA
IKRLMKGLNVDDEKYPPKNLQYFINNAKEQGLRPDQVDATDSFNLKFVELYRAYEQQCQR
EGVVDFPELLLRCYELLAHNAPLRAHYQARFRHILVDEFQDTNKLQYAWLKMLAGQSNAI
FAVGDDDQSIYAFRGANVGNMRDFEREFDVRHLIKLEQNYRSHGHILDAANELIANNARR
LGKNLRTDAGHGEPVRVYEAATDTQEAAWIVEEVRALMLNGLARSEIAVLYRSNAQSRTI
EHTLVNAGIPYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARTI
EQLADAARLYGCSMAAAIPYVTGKAGSSLAAFANLVAKMRAETEHMSLPETVEQVVRASG
LAEFYQGEREGQDRLENLQELVNAAAAFVSEEGYGLDTPARSIPLAPGASAAPEVVYAGP
DAATTVLDARSLAEPAQQPDTMTPLAGFLSHASLEAGDSQAQAGQDAVQLMTVHAAKGLE
FTAVFITGLEEGLFPHENSAVDPDGLEEERRLMYVAITRAKERLYLSFAQSRMLHGQTRY
NVRSRFFDELPQATLKWLTPKAEAGSRWGGRSDNAGWGRDWFARPERGERRGGYTGEQAA
SAPLPSFANEQRAADTGFRVGQQVFHTKFGEGAIVALEGSGADARAQVRFKRHGEKWLAL
AVAKLQAVE
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgcccgatttgcttgccaatctgaaccccgaacaactcgcggccgtcacgctgccgaac
gagccggcgctgatcctggccggtgctggcagcggcaagacgcgcgtgctgatcacgcgc
attgcgtggctgatccagcagcagcttgcctcgcccgcgacggtgctggccgtcaccttc
accaacaaggccgcgcgcgagatgatggcgcgcctctcggcgctcctgcccatcgacacg
cgtggaatgtggatcggcacctttcacggcctgtgcaaccgcatgctgcgcgcgcatcac
cgcgatgccggcctgcccgccacgttccagatcctcgatacggccgaccagctctcggcc
atcaagcgtctgatgaagggcctgaacgtcgacgacgaaaaatatccgccgaagaacctg
cagtacttcatcaacaacgccaaagagcaggggctgcgacccgatcaggtcgatgccacc
gacagcttcaatctgaagttcgtcgagctttatcgcgcctacgagcagcagtgtcagcgc
gaaggcgtcgtcgattttccggagttgctgctgcgctgctacgaactgctcgcgcacaat
gcgcctttgcgcgcgcattaccaggcgcgcttccggcatatcctcgtcgacgagttccag
gacacgaacaagctgcagtacgcatggctgaagatgctggcgggtcagtcgaacgccatt
ttcgcggtgggtgacgacgatcaatcgatctacgcgtttcgcggcgcgaacgtcggcaac
atgcgcgatttcgagcgcgagttcgacgtgcggcacctgatcaagctcgagcagaactac
cgttcgcatggccatatcctcgacgcggcgaacgagctcatcgccaacaacgcgcgccgg
ctcggcaagaatctgcgcaccgatgcgggccacggcgagcccgtgcgcgtgtacgaggcg
gccaccgatacgcaggaggccgcgtggatcgtcgaggaagtccgcgcgctgatgctcaac
ggcctcgcccgcagcgagatcgccgtgctctaccgcagcaacgcgcagtcgcgcacgatc
gagcacacgctcgtcaatgcgggcattccgtaccgcgtctatggcgggctgcgctttttc
gagcgccaggaagtcaagcatgcgcttgcgtacctgcgtctcatcgacaacccgaacgac
gatacggcctttgcccgcgtcgtgaattttccgacccgcggcatcggggcgcgcacgatc
gagcaactggccgacgcggcgcggctttacggttgctcgatggccgcggcgattccctat
gtcaccggcaaggcgggctcgagcctcgcggcgttcgcgaacctcgtcgcgaagatgcgc
gccgagaccgagcacatgagcctgcccgagacggtcgagcaggtcgtgcgcgcaagcggt
cttgccgagttctatcaaggcgagcgcgaaggtcaggatcggctcgagaacttgcaggaa
ctcgtgaacgcggcagcggccttcgtgagcgaggagggctacgggctcgatacgccggcg
cgctcgattccgctggcgccgggcgcgagcgcggcgcccgaggtggtttacgccgggccc
gatgcggccacgacggtgctagacgcacgcagcctcgccgagccggcgcagcagcccgac
accatgacaccgctcgcgggctttctctcgcacgcctcgctcgaggccggcgacagccag
gcgcaggcgggccaggatgccgttcaactgatgacggtgcatgcggcgaagggcctcgaa
ttcacggccgtcttcatcaccgggctggaagagggccttttcccgcacgagaacagcgcg
gtggatccggacgggctcgaagaggagcgccgcctgatgtacgtggcgatcacgcgcgcg
aaagagcggctctatctgtcgttcgctcaaagccgcatgctgcacggccagacgcgctac
aacgtgcgatcgcgctttttcgacgaactgccgcaggcgacgctcaagtggctgacgccg
aaggccgaagccggctcgcgttggggcgggcgctcggacaatgcgggttggggacgcgac
tggttcgcgcgccccgagcgcggcgagcgccgtggcggctacacgggcgagcaggccgcc
tcggcgccgctgccctcgttcgccaacgagcagcgcgcggccgatacgggctttcgcgtg
ggtcagcaggtgtttcacacgaagttcggcgagggtgcgatcgtcgcgctcgagggcagc
ggcgccgacgcgcgcgcgcaggtgcgattcaagcggcacggcgaaaaatggctcgcgctg
gctgtggcgaaactccaggcggtcgaatga

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