Trinickia caryophylli: U0034_18805
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Entry
U0034_18805 CDS
T09722
Name
(GenBank) efflux RND transporter permease subunit
KO
K07788
multidrug efflux pump
Organism
tcar
Trinickia caryophylli
Pathway
tcar02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
U0034_18805
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tcar02000
]
U0034_18805
Transporters [BR:
tcar02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
U0034_18805
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
ACR_tran
SecD_SecF_C
DUF5788
Motif
Other DBs
NCBI-ProteinID:
WQE11759
LinkDB
All DBs
Position
1:4184971..4188198
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AA seq
1075 aa
AA seq
DB search
MNISRPFIRRPIATGLMAFALLVVGLMAYRLMSVSALPEVDYPTIQVYTQYPGAAPDVMS
SSVTAPLEKQFGQMAGLKRMNSTSALGVSLITLQFQTTTSLDEAEQEVQAAINSADSTLP
SNLPYPPVYNKVNPADTAILTLAVTSDTLPLTRVEDLADTRIAQKLSQVGGVGLVTLSGG
ARPAVRVQTNTRALNAMGLSLEDVRTAIGDANVNTAKGSIDGPLQAFTIDANDQLGSADE
YAKLVLAYKNGAPVRLADVASITEAAENPRQAAWSGTAPAIVINVQRQPGANVIEVVDRI
EALLPQLRATMPSTVKIGVLSDRTRTIRASVREVKFELAAAVALVVMVIFVFLRRAALTL
IPAVTVPFALVGTLAVIYVLGFSVNNLTLMALTVATGFVVDDAIVMLENVMRHIEAGETP
LDAALKGAREIGFTILSISVALVAVLIPLFFMPDVIGRLFREFAVTLAVAIVVSAWVSLT
LTPMMASRMLRAQVPAQVSSDPGPSADFMDRLGARYMRALDWALSHQAAVTAGVALTAAS
TIALFVFMQKGFFPEQDTGLIEGIAQASPKVSFERMASLQQVLAQQLSRDPAVQSVSSLV
GIDRNNATLNTARMLITLKDGGDTSRDVIARLAKATDGRAGMKLYLHPVQDLTLDDQINA
NSYRIGVQATDDAELAQWTSKLLAALRADPLFTDVQSQARQQGNVLRIDFDRATASRLGI
SAADVDNLLYDAFGDRQVSTIYTHVNQYHVTLGADAALLGTNPLAVFDGLYVGASSSSSS
TSSTSSISSTSSSSSGSSGSTSSTTSTASSSSGSGGTAMAPLSGIASASLGSSALTVQRQ
GQFPYADVSFNVAAGVTLGTAVERVERIEAALRAPASVQISLEGAAELYRSSMANEALLL
AGALIAVYILLGMLYESLVHPLTILSTLPSAAFGALGGLLLVGDELDIIGLIGIVLLVGI
VMKNAIMMVDFALAAERESGLSARDAIRRACELRLRPILMTTCASLVGALPLAFGTGMGH
ELRQPLGVAIIGGLAVSQLLTLFSTPVIYLGLHRLAARLAGRRRRGEGAERAAGE
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgaacatctcgcgtccgttcatccgccgccccatcgcgacggggctcatggcttttgcg
ctgctggtcgtcgggctcatggcgtatcggctcatgtccgtttcggcgttgccggaggtc
gactacccgactatccaggtctacacgcaatatccgggcgccgcgcccgacgttatgagc
tcgtcggtgacggcaccgctggaaaagcagttcgggcagatggcggggctcaagcgaatg
aactcgacgagtgccctcggcgtgtcgctgatcacgctgcagtttcagacgacgacttcg
ctcgacgaggccgagcaggaggtgcaggcggcgatcaacagcgccgacagtacgttgccg
tcgaatctgccttatccgccggtatacaacaaggtcaacccggccgatacggcgattctc
acgctcgcggtgacctccgacacgctgccgcttacgcgagtggaggatcttgccgatacg
cgtattgcacaaaagctctcgcaggtgggcggcgtgggcctcgttacgctgtcgggtggc
gcgcggccggccgtgcgcgtgcagaccaacacgcgcgcgctcaacgccatggggctttcg
ctagaggatgtccgcacggccatcggcgatgcgaacgtcaatacggccaaaggctcgatc
gacgggccgctgcaggcgttcacgatcgatgcgaacgatcagctcggctcggcggacgag
tatgcgaagctcgtgctcgcctacaagaacggggcgcccgtgcggctggccgacgtggcc
tcgatcaccgaggcggccgagaatccccgacaggccgcgtggagcgggactgcaccggct
atcgtcatcaacgtgcagcggcagcccggagccaacgtcatcgaggtcgtcgatcgcatc
gaggcgctgctgccgcaactgcgcgcgacgatgccgtcgacggtcaagatcggtgtgctc
agcgaccggacgcggacgatccgcgcgtcggtgcgcgaagtgaagttcgaactcgcggcg
gcggtggcgctcgtcgtcatggtcattttcgtttttctgcggcgcgccgcgctgacgttg
attccggccgtgaccgtgccgtttgcgctggtcggtacgctcgcagtcatctacgtgctc
ggtttttcggtcaacaacctgactctgatggcgctgacggtggcgacggggtttgtcgtc
gacgacgctatcgtcatgctcgagaacgtcatgcgtcatatcgaagcgggcgagacgccg
ctcgatgccgccctgaagggcgcgcgcgagatcggcttcacgattctttcgatctcggtg
gcgctcgtggccgttttgatcccgctctttttcatgcccgacgtcatcgggcggctgttt
cgcgaattcgccgtcacgctggccgtggcgatcgtcgtttccgcctgggtgtcgctcacg
ctcacgccgatgatggcttcgcgcatgctgcgcgcacaggtgccggcgcaggtatcgtcc
gaccccgggccgtcggcggacttcatggaccggctcggcgcacggtacatgcgcgcgctc
gattgggcgctctcgcaccaggcggctgtcacggccggcgtcgcgttgaccgccgcctcg
acgatcgcactcttcgtcttcatgcagaagggatttttcccggagcaggatacgggcctc
atcgagggcatcgcgcaggcatccccgaaggtttcgttcgagcgcatggcgtcgttgcag
caggtcctggcgcagcagctatcgcgcgatccggcggtgcaaagcgtgtcgtcgctcgtc
ggcatcgatcggaacaacgccacactgaacaccgcgcgcatgctcatcacgctcaaggat
ggcggcgatacgagccgcgacgtgatcgcacggctcgccaaagcgacggacggccgtgcc
ggcatgaagctctatttgcatcccgtgcaggacttgacgctcgacgatcagatcaacgcg
aacagctatcgcatcggcgtgcaggcgaccgatgacgcggaactggcgcaatggacgagc
aagctgctggcggcattgcgtgccgatccgcttttcaccgacgttcagagccaggcacgg
cagcaaggcaacgtactgaggatcgatttcgaccgcgcgacggcgtcgcggctcggcatt
tcggccgcggacgtggacaacctgctttacgatgccttcggcgatcgtcaggtgtcgacc
atctatacgcacgtgaaccagtatcacgtgacgctcggcgccgatgcggcgctgctcggc
accaacccgctcgccgtcttcgatggtctgtacgtgggggcatcgagttcgtcttcctcc
acgtccagcacatcgagcatatcgagtacctcaagcagttcgagcggttcgagcggttcg
acctcttccaccacgtccacggcgtcgagcagttcgggcagtggcggtactgccatggcg
ccgctctcgggcatagcttcggcgagcctcggcagcagtgcgctcaccgtgcaacggcaa
ggtcagtttccttatgccgacgtctcgttcaacgtggcggctggcgtgacgttgggcacg
gctgtcgagcgtgtggagagaatcgaggcggcgctgagggccccggccagcgttcagata
tcgctcgaaggggcggccgagctttaccgatcgtcgatggcgaacgaagcgctgttgctc
gccggtgcgctgattgcggtctatatcctgctcggcatgctttacgagagcctcgttcat
ccgctcacgattctttccacgctgccgtccgccgcgttcggggccctcggtgggttgttg
ctcgtcggcgacgaactcgacatcatcgggctcatcggtatcgtgctgctcgtcggcatc
gtgatgaagaacgccatcatgatggtcgactttgccctcgcggccgagcgggagagcggg
ctgtcggctcgggacgcaatccggcgcgcctgcgaattgcgcttgcgcccgattctgatg
acgacctgcgcgtcgctcgtcggcgcgctgccgctcgccttcggcacgggcatggggcac
gaactgcgtcagccgctcggcgtcgcgatcatcggcgggcttgccgtcagccaattgctg
acccttttctcgacgcccgtcatctacctggggctgcatcgtcttgcggcgcgcctcgca
ggccgtcgcaggcgcggcgagggcgccgagcgcgccgctggcgagtaa
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