Trinickia caryophylli: U0034_19265
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Entry
U0034_19265 CDS
T09722
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tcar
Trinickia caryophylli
Pathway
tcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0034_19265 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcar03021
]
U0034_19265 (rho)
03019 Messenger RNA biogenesis [BR:
tcar03019
]
U0034_19265 (rho)
Transcription machinery [BR:
tcar03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
U0034_19265 (rho)
Messenger RNA biogenesis [BR:
tcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U0034_19265 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
ATPase_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WQE11847
LinkDB
All DBs
Position
1:complement(4280358..4281620)
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AA seq
420 aa
AA seq
DB search
MHLSELKSLHVSQLIEMANGLEIESANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKPLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKANHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKSNSEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagcttaagtctctgcacgtgtctcaattgatcgagatggcgaacggc
ctcgagatcgaaagcgcgaaccgtctgcgcaagcaggaactgatgttcgccatcctgaaa
aagcgcgccaaaaccggcgagaccattttcggcgacggcacgctcgaagtgctgcccgat
gggttcggtttcctgcgctcgccggaaatgtcgtatctcgcgagcaccgacgacatctat
atcagcccctcgcagatccgccgtttcaacctgcatacgggcgatacgatcgaaggcgag
gtgcgcacgccgaaagacggcgagcgctatttcgcgctggtgaaggtcgacaaagtcaac
gggcagccgcccgaggcctcgaaacacaagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctcttgctcgagcgcgaaatgcgcggcgaggaaaacgtcaccggccgc
atcatcgacatgatcgcgccgatcggcaagggtcagcgcggattgctcgtggcctcgccc
aagtcgggcaagaccgtgatgcttcagcatatcgcccacgcgatcaaggcgaaccacccc
gacgtcgtgctcttcgtgctgctcatcgacgagcgccccgaggaagtgacggaaatgcag
cgttcggtggcgggcgaagtgatcgcctcgacattcgacgagccggccacgcggcacgtg
caggtcgccgaaatggtcatcgagaaggccaagcgcctagtcgagatgaagcatgacgtc
gtgatcctgctcgattcgatcacgcgtctcgcacgcgcctacaacaccgtgattcccgct
tcgggcaaggtgctgacgggcggtgtcgacgcaaacgcgctgcagcgtccgaagcgcttt
ttcggtgccgcgcgaaacatcgaggaaggcggctcgctcacgattatcggcacggcgctc
atcgaaacgggcagccgtatggatgacgtgatctacgaggagttcaagggcaccggcaac
atggaagtgcacctcgaacgacgtctcgcggaaaagcgcgtctacccgtccatcaacctc
aacaagtccggcacccgccgcgaagaattgctcatcaagcccgagatcctgcagaagatc
tgggtcctgcgcaaattcatccacgacatggacgaggtcgaggcgatggaattcctgctc
gacaagatccgccagaccaagagcaactcggaattcttcgatctgatgcgccgcggcggt
tga
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