Trinickia caryophylli: U0034_21870
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Entry
U0034_21870 CDS
T09722
Name
(GenBank) type I secretion system permease/ATPase
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
tcar
Trinickia caryophylli
Pathway
tcar02010
ABC transporters
tcar03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
U0034_21870
03070 Bacterial secretion system
U0034_21870
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tcar02000
]
U0034_21870
02044 Secretion system [BR:
tcar02044
]
U0034_21870
Transporters [BR:
tcar02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
U0034_21870
Secretion system [BR:
tcar02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
U0034_21870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
Peptidase_C39
SMC_N
ABC_ATPase
AAA_29
AAA_22
AAA_21
AAA_16
DUF87
AAA_18
RsgA_GTPase
NB-ARC
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WQE15200
LinkDB
All DBs
Position
2:complement(590426..592552)
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AA seq
708 aa
AA seq
DB search
MNDCHQTASPPDPGLAALALIAQFHGMPTDIEQMRHASGQPAGQLALADLELAARSLGLK
TRRVRTTAGRLVCLPKPALMLDKGGAHFVLAACDADKALIAEANATSPTVSTPEAVMARS
DGQVLLIASRASLAGQLTQFDFSWFIPAVVKYRRLLLEVLAVSAVLQVFGLVSPLMFQVV
MDKVMVNRAFNTLNVVCVALLISAIFEVLLNGVRNYVFAHTASRIDVELGARLFRHMLAL
PLAYFGVRRVGDTVARVRELENIRNFLTGQTLTALIDLCFSIIFLAVMCMYSVWLTLVVV
VSLPVYAVISMMITPMLRQRLNEKFARTADNQSFLVETVSGIETIKAMAVEPQFTRRWDN
TLAGYVSAGFRVTSLGNVGQQLIQLVGKLVSLVTLFLGARFVIEGKLSVGQLVAFNMMAQ
HVAAPVLRLAQLWQDFQQIGISMSRLGDVLNTRTELPQSRQTLPTLHGNVSFHDVRFRYR
PDGPTVLDGVSLDIKAGEVVGIVGRSGSGKSTLTKLLQRLYVPEQGRVRIDGIDLTLADP
AWLRRQIGVVLQENLLFNRSIRENIALTDPGASLDVVIRAAQLAGAHEFISEMPEGYDTV
VGEHGSNLSGGQRQRIAIARALVTNPRILIFDEATSALDFETERVIQRNMQAICTGRTVI
IIAHRLSSVRHANHIVAMDKGRVVERGTHDSLLELQGYYAHLVSLQHA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaacgattgtcaccaaacagcttcgccacccgatcccgggctggcggcccttgcgctg
atcgcgcaatttcacggcatgcccactgatatcgaacaaatgcgccacgcgagcgggcaa
ccggccggccaacttgccttggcggatctcgaactggcggcgcgctcactcgggctcaag
acgcgtcgcgtgcgaacgaccgccgggcgcctcgtctgcctacccaagcccgcgctgatg
ctagataagggcggcgcgcatttcgtgcttgcggcttgcgacgccgacaaggcgctgatc
gccgaagccaacgcgacaagcccaaccgtctccacgcccgaagcggtcatggcacgctcg
gacggacaggtgctgctgatcgcgtcgcgcgcgtcgctcgctggccagcttacgcagttc
gatttctcgtggttcattccggccgtcgtcaaataccgccgcctgctgctggaggtgcta
gcggtgtcggcggtgctacaggtcttcggcctcgtctcgccgctgatgttccaggtcgtg
atggacaaggtcatggtcaatcgcgcgttcaacacgctcaatgtcgtgtgcgtcgcgcta
ttgatcagcgcaatcttcgaagtcctgttgaacggggtgcgcaactacgtattcgcgcat
accgcgagccgaatcgacgtagagctgggtgcgcggttgttccggcatatgctggcgttg
ccgctcgcctatttcggtgtccgtcgcgtcggcgatacggtcgcccgcgtgcgtgagctc
gagaatatccgcaactttctcaccggccagacgctaacggcgctgatcgatctgtgtttc
tcgatcatctttctcgccgtcatgtgcatgtacagcgtgtggctcacgcttgtcgtagtt
gtctcattgccggtgtatgcggtcatctcgatgatgattacgccgatgttgcgccagcga
ctcaacgagaaattcgcgcgtaccgccgacaaccaatcgttccttgtcgagactgtgtcg
ggtatcgaaaccatcaaggcgatggctgtcgagccccagttcacgcgccgctgggacaac
acgctggccggctatgtgtcggcggggttcagggtcacatcgctcggcaacgtgggccaa
cagctgattcagctcgtgggcaagctggtatcgcttgtgacgctgttcctcggcgcgcgc
ttcgtgatcgagggtaagctgtcggtcggccagctcgtcgccttcaacatgatggcgcag
cacgttgccgcgcctgtgctgcggctcgcgcagctgtggcaggattttcagcaaatcggg
atctcgatgagcaggctcggggatgtcctcaatacccgtaccgagctgccacagagccgc
cagacactgccgacgctgcatggcaacgtgagcttccacgacgtgcgtttccgatatcgc
cccgacggtcccaccgtcctcgacggggtgtcgctcgacatcaaggcgggggaggtcgtg
ggcattgtcggtcgttcgggctccggcaagagcacgctgacgaagttgctgcaacggttg
tacgtaccggagcaggggcgcgtacgaatcgacggcatcgacctgacccttgcagaccct
gcgtggctgcggcggcaaatcggcgtcgtactgcaggagaacctgctgttcaatcgctcg
attcgcgagaacatcgccctcaccgatcccggcgcatcgctcgatgtcgtcatccgtgcc
gcgcagctcgccggcgcacacgagttcatatctgaaatgccggaaggctacgacacggtt
gtcggcgagcacggctcgaacctttccggcggccagcggcagcggatcgcgatcgcgcgg
gcgctggtgaccaatcctcgcatcttgatcttcgacgaggcgacgagtgcgctcgacttc
gaaaccgaacgcgtcatccagcgcaacatgcaggcgatatgcaccggcaggacggtcatc
atcatcgcgcaccggctcagttcggtgcgccatgcgaatcatatcgtcgcgatggacaaa
ggccgggtcgtcgagaggggcacgcatgattcacttctcgaactgcagggatattacgct
catctcgtgtcgctgcagcatgcgtga
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