Trinickia caryophylli: U0034_22995
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Entry
U0034_22995 CDS
T09722
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K18901
membrane fusion protein, multidrug efflux system
Organism
tcar
Trinickia caryophylli
Module
tcar_M00698
Multidrug resistance, efflux pump BpeEF-OprC
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tcar02000
]
U0034_22995
01504 Antimicrobial resistance genes [BR:
tcar01504
]
U0034_22995
Transporters [BR:
tcar02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
U0034_22995
Antimicrobial resistance genes [BR:
tcar01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump BpeEF-OprC [MD:
M00698
]
U0034_22995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
Biotin_lipoyl_2
HlyD_3
Biotin_lipoyl
TORC_M
Motif
Other DBs
NCBI-ProteinID:
WQE15400
LinkDB
All DBs
Position
2:complement(859138..860358)
Genome browser
AA seq
406 aa
AA seq
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MSKQRFSRTRIAYAAVALVALAGAGALTAVRVNANAPAQAAPAAPEVDVATVLDKTVTDW
QEYSGRLEAVDRVDVRPLVSGTIVSVNFKDGSLVKKGDVLFVIDPRPYAAEVDRAQAQLA
AAKARDGYAQTDWQRAQRLIADNAIAKRDFDEKKNAAVESAANVKAAEAALEAARINLGY
TKIVAPVSGRVSRAEVTLGNVVTAGSTAPALTTLVSVSPIYASFDVDEQTYLKYISRART
GTQVPVELGLANEAGYSRSGTVASVDNRLDTASSTIRVRARFDNPDGTLVPGLYARIKVG
GGAPHRALLVEEAAIGTDQDKKFVLAVGADGRVAYRPVTLGEQHGNLRVIASGLAAGDRI
VVRGIQRVRPGESVRPRMVAMDESDENAAKPSTDARANGVSDPARS
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcagcgtttttcccgtacacgcatcgcgtacgcggccgtcgccctcgtggcg
ctggccggtgccggcgcgctcaccgcggtgcgcgtgaatgcgaatgccccggcgcaggcc
gcgccggcggcgcctgaagtcgatgtggcgacggttctcgacaaaacggtcacggattgg
caggaatattcgggccggctcgaggctgtcgaccgcgtggacgttcgcccgctcgtctcg
ggcacgatcgtctcggtcaacttcaaagacggctcgctcgtcaaaaagggcgacgtgctg
ttcgtgatcgatccgcgcccgtacgcggccgaagtcgatcgcgcccaggcgcagctcgcc
gcggccaaggcgcgcgacggttacgcccagaccgattggcagcgcgcgcagcgcctcatc
gccgacaacgctatcgccaagcgcgatttcgacgagaagaagaacgctgcggtcgaatcg
gccgccaacgtcaaggccgccgaggcggcgctcgaggccgcccgcatcaacctcggctac
acgaagatcgtggcgccggtgtccggccgcgtctcgcgcgccgaggtgacgctcggcaac
gtcgtgacggccggctcgaccgctcccgcgctgacgacgctcgtttcggtgtcgccgatc
tacgcatcgttcgacgtagacgaacaaacgtacctcaagtacatcagccgggcgcgcacc
ggcacgcaggtgccggtcgagctcggtctcgcgaacgaggcgggctattctcgctcgggc
accgtcgcatcggtcgacaaccggctcgacacggcgtcgagcacgatccgcgtgcgtgcg
cgcttcgacaatccggacggtacgctcgtgccgggtctctacgcgcgcatcaaggtgggc
ggcggtgccccccatcgcgcgctgctcgtcgaggaagccgcgatcgggacggatcaggac
aagaagttcgtgctggccgtgggcgccgacgggcgtgttgcctatcgtccggtcacgctc
ggcgagcagcacggcaatctgcgcgtgatcgcgagcgggctcgccgcgggcgatcgcatc
gtggtgcgcggcatccagcgcgtgcggcccggcgagtcggtgcgcccgcgcatggtggcg
atggacgagagcgacgagaacgcggcgaagccttcgaccgacgcgcgcgccaatggcgta
agcgacccggcacgctcgtga
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