KEGG   Trinickia caryophylli: U0034_25135
Entry
U0034_25135       CDS       T09722                                 
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
  KO
K11900  type VI secretion system protein ImpC
Organism
tcar  Trinickia caryophylli
Brite
KEGG Orthology (KO) [BR:tcar00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:tcar02044]
    U0034_25135 (tssC)
Secretion system [BR:tcar02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   U0034_25135 (tssC)
SSDB
Motif
Pfam: VipB VipB_2
Other DBs
NCBI-ProteinID: WQE13994
LinkDB
Position
2:complement(1326888..1328447)
AA seq 519 aa
MKQNESRRSASESAVLETSAQPTMGESDSVYASLCDKINLKAVAEARPLEAFRDNDTLSE
ASADERVARGMDALLNLIAQESRPVDRLDKSLLDFYIGQLDRQISRQLDAVMHTPEFQAL
EGRWRGLKMLVSRTDFRKNARIEVLDVSKDALQRDFEDTPELIQSGLYRLTYVEEYDTPG
GQPISAMVSDFEFANSPMDVALLRNISKVAAAAHMPFIGSVGAAFFGKKSMEEVAAIQDI
GNYFDRAEYIKWKSFRETDDARYVGLTMPRVLGRLPYGKDTTPVRAFNYEEAVKGPDHDK
YLWVNASFAFAANMVRSFVNNGWCVQIRGPQAGGKVEDLPVHLYDLGTGVQPKIPTEVLI
PETREFEFANLGFIPLSFYKNHDFACFFSASSTQKPALYETKEATANSRINARLPYIFLL
SRIAHYLKLIQRENIGTTKDRRLLELELNSWIKGLVTEMKDPGDELQASHPLREAKVTVE
DIEDNPGFFRIKLFIIPHFQVEGMDIGLSLVSQMPKAKS
NT seq 1560 nt   +upstreamnt  +downstreamnt
atgaaacagaacgaatcccggcgcagcgccagcgagagcgctgtgctcgaaacttccgcg
cagccgaccatgggcgagagcgacagcgtttacgcttcgttgtgcgacaagatcaatctg
aaggcggttgccgaagcgcggccgcttgaggccttcagagacaacgacacgttatccgag
gcttcggccgatgaacgggtggcgcgcggcatggacgcgctgctgaacctgatcgcgcag
gagagccggccggtggaccggctcgacaagtcgctgctggacttctacatcgggcaattg
gaccggcaaatcagccgccagctcgacgcggtgatgcatacgcccgaattccaggcgctc
gagggccgttggcgcgggctgaagatgctcgtgtcgcgcacggacttccgcaagaacgcc
agaatcgaggtgctcgacgtttcgaaggatgcgttgcagcgcgatttcgaggacacgccg
gaactcatccagagcggtctttatcgcctgacctacgtcgaagagtacgacacgcccggc
gggcagcccattagcgcgatggtcagcgacttcgagttcgcgaattcgccgatggatgtg
gcgctgctgcgcaacatctcgaaggttgcggcggcggcccacatgccgttcatcggttcg
gtgggcgccgcgttcttcggcaagaaatcgatggaagaagtggcggctatccaggatatc
ggcaactacttcgaccgtgccgagtacatcaagtggaagagcttccgtgagacggacgat
gcgcgctatgtcggcctgacgatgccgcgggtgctcgggcgcctgccatacggcaaggat
acgacgccggtgcgcgccttcaattacgaagaggccgtgaagggccccgatcacgacaag
tatctgtgggtcaatgcgtcgttcgcgttcgcggccaacatggtgcgcagcttcgtgaac
aacggctggtgcgtgcagattcgcggcccgcaggcaggcggcaaggtggaggatctgccg
gttcacctgtacgaccttggcaccggtgtgcagccgaagatcccgacggaagtgctgatt
cccgagacgcgcgaattcgagttcgccaatctgggcttcattccgctgtcgttctacaag
aatcacgactttgcgtgcttcttctcggccagctcgacgcagaagcccgcgctgtacgag
acgaaggaggcgacggccaacagccgcatcaacgcgcgcttgccgtacatcttcctgctc
tcgcgcatcgcgcactacctgaagctgatccagcgcgagaacatcggcacgaccaaggac
cgccgtctgctcgagctggagttgaacagctggatcaaggggctcgtgaccgagatgaag
gacccgggtgacgagctgcaggcgtcgcacccgctgcgagaagcgaaggtgacagtcgag
gatatcgaggacaacccgggctttttccgcatcaagctcttcatcattccgcacttccag
gtggagggtatggatatcgggctgtcgctggtttcgcagatgcccaaggccaagagctga

DBGET integrated database retrieval system