Trinickia caryophylli: U0034_26130
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Entry
U0034_26130 CDS
T09722
Name
(GenBank) response regulator
Organism
tcar
Trinickia caryophylli
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Response_reg
HATPase_c
HisKA
PAS_4
PAS_3
PAS_9
PAS
GAF_2
GAF
PAS_8
SPOB_a
B12-binding
dCache_1
Motif
Other DBs
NCBI-ProteinID:
WQE14173
LinkDB
All DBs
Position
2:1565449..1569891
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AA seq
1480 aa
AA seq
DB search
MTDASRASRLEQGLNFLSGGGELGRLIRNFDWRSTPLGEPESWPQNLKLALRIMLNSSQP
MWIGWGKTLVYFYNDPYKAIIGGKHAWALGRPMIEVWGEIWSEIEPMLDTAMNGGRGTYV
EAQLLVMERNGYPEETYYTFSFSPIPDDDGNAGGILCANTDDTQRVVGERQLALLRDVAA
DTAHARTWQDACARSAQALATNARDLPFAMIYIAEEPNASAFELASATGIEHGHRAAPLS
IAPGDASLWPLHEAVQTRKPVVVSDLAARVGVALPSGPWSEPPKQAVVLPIFPGGERGRV
GALVVGFNPYRLFDRNYRSFLSLVAGQIAAAVAYALAYEEERRRAEALTEIDRAKTAFFS
NVSHEFRTPLTLMLGPLEDALNEAMPAALPSHQRRRLQMAHRSGLRMLKLVNSLLDFSRI
EAGRVVAAFEPADLSKFTAELASNFDSATERAGLALSIDCPPLPQSVYVDRDMWEKIVLN
LLSNAFKFTFEGEIAVQMRPSADGRAAELVVRDTGVGIPAGELPRLFERFHRVEGQRSRS
FEGSGIGLALVHELVKLHGGSIAVESEVGRGTQFLVSLPFGTAHLAAERIGTERMRAWNS
SRAEAYVEEALRWLPRGDLSEDGSDAERAEELPDLAFATRTMGSRVLVVDDNADMRSYMR
RLLKGRWEVETAADGQAALEAIRQRKPDVVVTDVMMPNMDGFGLLHEIRRDPALRDLPVI
VVSARAGEEARVEGLESGADDYLTKPFSAREFVARVNANLEMARLRREVTRDLRESEARF
RNMANHAPVMMWISKPDGAFDYLNQPWCDFTGQTLDDAIGDGAWNALHPEDREATRRAFL
ADNVEQRLFRAEYRVRTAQGDYRWVLSAAVPRFDDDGRFLGYIGSIIDITDRKEAEQILR
EANVVLERRVEAAIAERTHTEAQLRQAQKMEAIGKLTGGVAHDFNNVLQVIAGNLQLLHR
DVAGNLRAEQRLQTAVAATARGSRLASQLLAFGRRQPLSPKTVNLGRLVRGIDDMLRRSL
GESVEIETVIAGGLWNTFVDTVQVENALLNLAINARDAMQGHGKLTIEAGNAFLDDVYVA
RHPDVTPGQYVMVAVTDTGCGIPAELLERVFEPFFTTKPEGRGTGLGLSMVYGFVKQSGG
HIKIYSEMGQGTTVRLYLPRARQPEDIETEVETGPVTGGTETVLVVEDDEDVRGTVVDLL
SELGYRVLRAKDAQSALAIVESGVPIDLLFTDVVMPGPLESPELARKARERLPNIAVLFT
SGYTDNAIVHGGRLDDGVDLLSKPYSREALARKIRQVLRHQVRGRPSQMPVPALLPGEPA
AAEREAQPPARTRGGILLVDDDPMVRFTTADMLAYLGYAVTEAADASEALSLLGKRQFDI
IVTDIALPDLSGDELAVRAIALQPGLRVIFASGYDELPDGGNHAALSDAMLLRKPYDRQQ
MEALLDAAMAARIASGMAGATAPSDRTRLPPSFEKVDRST
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcatcgcgcgcctcgcgcctcgagcagggattgaatttcctttcgggtggt
ggagaactaggcagactcattcgcaatttcgactggcggtcgaccccgctgggcgagccg
gagagttggccgcagaatctgaaactcgcgttgcgcatcatgctcaactcgagccagccg
atgtggatcggctggggtaagacgctcgtctatttctataacgatccttacaaggctatt
atcggcggcaagcatgcctgggcgctcgggcggccgatgatagaggtgtggggcgagatc
tggagcgagatcgagccgatgctcgatacggcgatgaacggcggacgcgggacgtatgtg
gaagcgcaactgctcgtcatggagcgcaacggctatcccgaggaaacgtattacacgttc
tcgttcagcccgattccggacgacgacggcaacgccggcggcattctctgcgcgaacacg
gacgacacacagcgtgtggtcggagagcggcagctcgcgctcttgcgcgatgtcgcggcc
gataccgcgcatgcgaggacctggcaggatgcctgcgcgcgcagcgcacaggcgctcgcg
acgaatgcgcgcgatctgccgttcgcgatgatctacatcgccgaggagccgaacgcgtcg
gccttcgagcttgcgagtgctacgggcatcgaacacgggcatcgcgccgcgccgctttcg
atcgcgcccggcgatgcctcgctgtggccgctgcacgaggctgtgcaaacgcgcaagccg
gtggtggtatccgatcttgcggcgcgcgtgggcgtggcgttgccgagcgggccctggagc
gagccgccgaaacaggcggtggtgctgccgatttttcccggtggcgaacgggggcgcgtt
ggcgcgctcgtggtcgggttcaatccgtatcggctcttcgatcggaattatcgaagcttc
ctgagcctcgtcgccggtcagatcgccgccgcggtggcctatgcgctggcttacgaggaa
gaacgacgtcgcgccgaggcactgacggagatcgatcgcgcgaagacggcgttcttctcg
aacgtcagccacgaattccgtacgccgctcacgctgatgctggggccgctcgaagacgcg
ctcaacgaagccatgccggcggcattgccgtcgcatcagcgccggcgcctgcagatggcg
caccgcagcgggctgcggatgctgaagctcgtcaattcgctgctcgacttttcgcgcatc
gaggctggccgcgtggtggccgcgttcgagccggccgatttgtcgaagttcacggcggag
ctggcctccaatttcgattcggcgacggagcgggcgggcctcgcgctgtcgatcgattgt
ccgccgctgccgcaatcggtctatgtcgatcgcgacatgtgggaaaagatcgtcctcaac
ctgctgtcgaacgccttcaagttcacgttcgagggcgagatcgcggtgcagatgcggccc
tcggccgacggccgcgcggcggaactcgtcgtgcgcgatacgggggtgggcattccggca
ggcgagctgccccggcttttcgaacgctttcatcgcgtggagggccagcgcagccggtcg
ttcgagggctccggcatcggccttgcgctcgtgcacgaactcgtcaagttgcacggcggc
tcgattgcggtggagagcgaggtcggacgaggcacccagtttctcgtgagccttcccttc
ggcaccgcgcatctggccgccgagcgaatcggcaccgagcggatgcgcgcctggaattcg
agccgcgcggaggcgtatgtcgaggaagcactgcgctggttgccgcgaggcgacctgagc
gaagacggcagcgatgcggagcgcgccgaggaactgcctgacttggcctttgctacgcgc
acgatgggctcgcgcgtgctcgtcgtcgacgacaacgcggacatgcgcagctatatgcgg
cgcctgctcaaggggcgttgggaagtcgagaccgccgctgacgggcaggcggcgctcgag
gcgataagacaacgtaagcccgatgtggtcgtcaccgacgtcatgatgccgaacatggac
ggattcggactgttgcacgagatccggcgggacccggcgctgcgcgatctgcccgtcatc
gtcgtctcggcgcgcgcgggcgaggaggcgcgcgtggaagggctcgagtcgggcgctgac
gattacctgaccaaaccgttttccgcgcgcgagttcgtggcgcgcgtcaatgccaacctg
gaaatggcgcggctgcgccgcgaagtcacgcgcgatctgcgcgaaagcgaggcgcggttc
aggaacatggccaaccacgcgcccgtgatgatgtggatcagcaagccggacggcgcgttc
gactacctcaatcagccctggtgcgatttcacggggcagacgctcgacgacgccattggc
gacggcgcgtggaacgcactgcatcccgaagaccgggaggctacgcgtcgggcgtttctg
gccgacaacgtcgagcagcggctgttccgcgccgagtatcgcgtgcgcacggcccagggc
gattaccggtgggtgctcagcgcggcggtgccgcgtttcgacgacgacggccggtttctc
ggctatatcggctcgatcatcgatatcaccgatcggaaggaggccgagcagattctgcgt
gaagccaatgtggtgctggagcggcgcgtggaggccgcgatcgccgagcgcacgcatacc
gaggcgcagttgaggcaggcgcaaaagatggaggcgatcggcaagctgacgggcggtgtc
gcgcacgatttcaacaacgtgctacaggttatcgcgggcaaccttcaattgctgcatcgt
gacgtggccggcaatctgcgtgcggagcaacgcttgcagacggctgttgcggccacggcc
cgcggctcgcggctggcctcgcaactgctcgccttcggacggcgccagccgctttcgccc
aaaacggtcaatcttggccggctcgttcgcggcatcgacgacatgctgcgccgctcgctt
ggcgagagcgtcgagatcgagacggtgattgcgggcggattgtggaatacgttcgtcgat
acggtgcaggtggaaaatgcgctgctcaacctcgcgatcaatgcgcgcgatgcgatgcag
ggccacggcaagctgacgatcgaggccggcaacgcgtttctcgacgacgtctacgtcgcc
cgccatccggacgtgacgcccggccagtacgtgatggtcgccgtgaccgatacgggctgc
ggaattcccgcggaactgctcgagcgcgtgttcgagccgtttttcacgaccaagcccgaa
ggccggggtacggggctcggcctcagcatggtctatgggttcgtcaagcaatcgggcggg
cacatcaagatctacagcgagatggggcagggcacgacggtgcggctctatttgccacgt
gcacgccagcccgaggacatcgaaaccgaggtcgagacagggcctgttacgggcggaacc
gaaacggtgctcgtggtggaggacgatgaggatgtgcgaggcaccgtggtggacctgctt
tcggaactcggctatcgcgtgctgcgcgcgaaggacgcacagagcgcgttggcgatcgtc
gaaagtggcgtgccgatcgatctgctcttcaccgatgtcgtcatgccgggcccgctcgag
agccccgaactcgcgcgcaaggcgcgtgagcggctgcccaacatagccgtgctgttcacg
tccggttataccgataacgcgatcgtccacggcggccggctcgacgacggagtcgatctg
ctcagcaaaccgtatagccgagaggcgctggcacgcaagattcgccaggtattgcgccat
caggtacgggggcggccttcgcagatgccggtgcccgcgctgttgccgggcgagcccgcc
gccgcggagcgcgaggcgcagccgccggcacgcaccagaggggggattctgctcgtcgac
gatgatccgatggtgcgcttcacgacggcggatatgctcgcgtatctgggctatgccgtg
accgaagcggcggatgcgagcgaagcgctgagcctgctcggcaagcgtcagttcgacatc
atcgtgaccgatatcgcattaccggacctttccggcgatgaacttgccgtacgggccatc
gcgctgcagcccggcttgcgtgtaatcttcgcctccggctatgacgagttgcccgatggc
gggaatcatgctgcgttgtccgatgcgatgctgctgcgaaaaccgtacgacaggcagcag
atggaggcgctgctcgatgccgccatggccgcgcggatcgcctccggcatggccggcgcg
acagcgccgtcggatcgcacgaggttgccgccgtcgttcgagaaggtcgacaggtccact
tag
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