Trinickia caryophylli: U0034_27255
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Entry
U0034_27255 CDS
T09722
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tcar
Trinickia caryophylli
Pathway
tcar03030
DNA replication
tcar03410
Base excision repair
tcar03420
Nucleotide excision repair
tcar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U0034_27255 (polA)
03410 Base excision repair
U0034_27255 (polA)
03420 Nucleotide excision repair
U0034_27255 (polA)
03440 Homologous recombination
U0034_27255 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcar03032
]
U0034_27255 (polA)
03400 DNA repair and recombination proteins [BR:
tcar03400
]
U0034_27255 (polA)
Enzymes [BR:
tcar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
U0034_27255 (polA)
DNA replication proteins [BR:
tcar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
U0034_27255 (polA)
DNA repair and recombination proteins [BR:
tcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
U0034_27255 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U0034_27255 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
WQE14373
LinkDB
All DBs
Position
2:1843225..1846005
Genome browser
AA seq
926 aa
AA seq
DB search
MPAERNLEGKTLVLVDGSSYLYRAYHAMPDLRGPDGEPTGALYGIVNMLRRMRKEVTAEY
SACVFDAKGKTFRDDWYPQYKAHRPPMPDDLGKQIEPIHFAVRALGWPLLMVDGVEADDV
IGTLAAEAERQGMNVLVSTGDKDLAQLVSDRVTLVNTMTNEKLDREAVIAKFGVPPERIV
DYLSLIGDTVDNVPGVEKCGPKTAVKWLMQYGTLDDIVANAGDIKGAVGENLRRALDFLP
LGRKLVTVERACDLKDHVESIEASLVTRPESPLELREIFMRHGFKTWLREVDALIASAED
AQALEPGLTGSAAVLAAEPAPTIDAPRCYETVQTWEHFDTWLARIDAAPITSFDTETTSL
DPMRAQIVGLSLSVGAGCAAYVPLAHRGPDAPRQLPRDEVLAKLKPWLESHDKKKLGQHL
KYDEQVLANYGIALNGIEHDTLLESYVLESHRTHDMDSLAMRHLGVKTIKYEEVAGKGAQ
QIGFDEVPLETAAEYAAEDADITFQLHTALYPQVEAEPGLLHVYRDIEIPTSRVLRKMER
NGVLIDSERLRQQSNEIASRLIQLEAEAYTLAGGEFNLGSPKQIGQIFFERLQLPVVKKT
PSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQA
VAVTGRLASNDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISGDES
LLRAFSQGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRD
AAKLYIDRYFARYPGVARYMDDTRASARQKGYVETVFGRRLWLPEINGGNGPRRQAAERA
AINAPMQGTAADLIKMSMIAVQDWLERERAASLMIMQVHDELVLEVPDSELPTVREKLPQ
LMCDVAELKVPLVAEVGVGTNWEEAH
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcagaacggaacctggaaggtaagactctcgtgctcgtcgacggctcgagctat
ctctatagggcttaccacgcgatgcctgacttgcgcggtccggacggcgaaccgacgggt
gcgctctacggaatcgtcaacatgctgcgacgcatgcgcaaggaagtcaccgcagagtat
agcgcgtgcgtgttcgacgccaagggcaagacgttccgcgacgattggtacccccagtac
aaagcccatcgcccgccgatgcccgacgatctcgggaagcagatcgagccgattcatttc
gccgtgcgtgcgttgggctggccgctgctcatggtggacggcgtcgaagccgacgacgtc
atcggcacgctggcggccgaggccgagcggcaaggcatgaacgtgctcgtctcgacgggc
gacaaggatctggcccaactcgtgagcgatcgcgtcacgctcgtcaatacgatgacgaac
gagaagctcgatcgtgaagccgtgatcgcaaagttcggcgtgccgcccgaacggatcgtc
gactacctctcgctcatcggcgatacggtcgacaatgtgcccggcgtggagaagtgcggc
ccgaagacggccgtcaaatggctcatgcagtacggcacgctcgacgatatcgtcgcgaat
gcgggcgacatcaagggcgctgtcggcgagaacctgcggcgtgcgctcgattttctgccg
ctgggccgcaagctcgtaacggtcgagcgcgcctgcgatctgaaggaccatgtcgaatcg
atcgaggcgtcgctcgtcacgcggcccgaatcgccgctcgagctgcgcgagatcttcatg
cgccacggcttcaagacgtggctgcgcgaagtcgacgcgctgatcgcgagcgcggaagac
gcgcaggcactcgagccggggttgaccggttccgccgcggtgttggcggccgagccggcg
ccgaccatcgacgcgccgcgctgctacgaaaccgtgcagacgtgggagcacttcgatacg
tggctcgccaggatcgacgccgccccgatcacctccttcgatacggaaacgacctcgctc
gacccgatgcgggcccagatcgtcgggctgtccctctccgtgggtgccggttgcgcggcc
tatgttcccctcgcgcaccggggccccgacgcgcctcggcagttgccgcgcgacgaagtg
ctcgccaagctcaagccgtggctcgaaagccacgacaagaagaagctcgggcagcatctc
aagtacgacgagcaggtgctggcgaactacggtatcgcgctgaacggcatcgagcacgat
accctgctcgagtcgtatgtgctcgagtcgcaccgcacgcacgacatggacagcctcgcc
atgcgtcacctgggcgtgaagacgatcaagtacgaggaggtggcgggcaagggcgcgcag
cagatcggtttcgacgaagtgccgctcgagaccgccgccgaatatgcggccgaggatgcc
gacatcacgttccagctgcacacggcgctctatccgcaagtggaagccgagccggggctc
ttgcacgtctatcgcgacatcgaaattccgacctcgcgcgtgctgcgcaagatggagcgc
aacggtgtgctgatcgacagcgaacggctgcgccagcagagcaatgaaattgcgtctcgg
ctcattcagctggaggccgaggcgtatacgctcgcgggcggcgaattcaacctcggttcg
ccgaagcagatcggccagatctttttcgaacgcctgcaactgcccgtcgtcaagaaaacg
ccgagcggcgcgccttccaccgacgaagaagtgctgcaaaagctcgccgaagactacccg
ctgccgaagctgctgctcgagcatcgtggcctctcgaagctgaagtccacctatacggac
aagctcccgcgcatggtcaatccggacacggggcgggtgcatacgaactatgctcaggcc
gttgccgtcaccgggcgccttgcgtcgaacgatccgaatctgcaaaacatccctgtgcgc
acggccgaagggcggcgcattcgcgaagcgtttatcgcgccgccgggcagcaagatcgtc
tcggccgactactcgcagatcgaactgcggatcatggcccacatttccggtgacgagtcg
ctgctgcgcgcgttctcgcagggcgaggacattcatcgcgcgacggccgccgaagtgttc
ggcgtcacgccgctcgaagtcacgagcgaccagcgccgcatcgccaaggtcatcaatttc
ggcctcatctacggcatgagctcgtttggcctcgcttcgaatctcggcattacgcgcgac
gcggcgaagctctatatcgaccgttacttcgcccgttatcccggcgtcgcacgctatatg
gacgacacgcgcgcgagcgccaggcaaaagggctatgtggaaaccgtattcggccgccgg
ctctggctgcctgaaatcaacggcggtaacgggccgcgccgtcaggccgcggaacgggcc
gcgatcaatgcgccgatgcagggcacggcggccgatctcatcaagatgtcgatgatcgcg
gtgcaggactggctcgaacgcgagcgggccgcgagcctgatgatcatgcaagtgcatgac
gaactggtactcgaagtccccgatagcgaacttcccacggtgcgcgagaaactgccgcag
ctcatgtgcgacgtagccgagctcaaggtgccgctcgtcgccgaagtcggcgtcggtacg
aactgggaggaagcgcattga
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