Trinickia caryophylli: U0034_27330
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Entry
U0034_27330 CDS
T09722
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tcar
Trinickia caryophylli
Pathway
tcar02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
U0034_27330 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcar03021
]
U0034_27330 (rpoD)
Transcription machinery [BR:
tcar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
U0034_27330 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GSH-S_ATP
RRN3
Motif
Other DBs
NCBI-ProteinID:
WQE14386
LinkDB
All DBs
Position
2:1861548..1864016
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AA seq
822 aa
AA seq
DB search
MAKTTGAKAAAVTGSGKGKRSGSGKPASQAVRKASEAKAAAPVAARKSAGKTAPGKAAAG
KTVARASAVAAGVTKAAKATARPKAETGAAAERAVKRAGSKSVVGAAARPDDSAVREAQV
STVQPAEVQQPRVETNAGTANSMTKKLNEVSVDDDATQADEQQTAPPGKAEKARARDRRA
KEKALLKDAFASTQPGTAEELEERRSKLRALIKLGKERGFLTYAEINDHLPDNFTETEAI
EGIISTFNDMGVAVYEQAPDAETLLLNDNAPNVASDDEVEEEAEVALSTVDSEFGRTTDP
VRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVMAISACPTTIADILVMAERVANDDLR
IDELVDGLIDPNAEDTDGFSAQEAESIENENEAAEEEDEEEEEEDDGAAQATANAAQLEA
LKRTSLDKFALISEWFDKMRRAFEKEGYKSKSYLKAQEAIQNELMSIRFTARTVERLCDT
LRAQVDEVRQVERQILHIVVDKCGMPRAEFIARFPSNETDLDWAEKIVAESHPYSAVLSR
NIPAIREQQQRLLDLQARVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAK
KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI
PVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIG
DDDDSHLGDFIEDTNTVAPSDAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHT
LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGS
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagacgacaggcgcaaaggcggcagcggtgacgggttcgggcaaaggcaagcgc
tccggttccggcaagccggcgtcgcaggcagtgcgcaaggcgtccgaggccaaggctgcg
gccccggttgccgccaggaaatcggcaggtaagaccgcgccaggtaaggcagcggcaggt
aagacggttgctcgagcttcggcggtggcggccggtgtgacgaaggcggcgaaagcgacc
gccagaccgaaagcggagacgggagccgccgctgagcgggcagtaaagcgggcaggttcg
aaaagcgtagtgggcgcggctgccaggccggacgattcggcagtgcgcgaagcccaggta
tccacggtgcaaccggctgaagtccaacagccgcgagtcgagactaatgccggtacggcg
aactccatgacgaaaaagctgaacgaagtatccgtcgatgacgacgcaacccaggccgac
gaacagcagacggcgcctccgggcaaggccgagaaggccagagcgcgcgaccgtcgcgcg
aaggagaaggcgcttctgaaggacgcattcgcgtcgactcagccgggcaccgccgaggag
ctcgaggaacgccgttcgaagctgcgtgcgctgatcaagctgggcaaggagcggggcttc
ctgacctacgccgaaatcaacgaccacctgcccgacaacttcacggaaacggaagcgatc
gagggcatcatcagcacgttcaacgacatgggcgtggcggtgtacgagcaggcgcccgat
gccgagacgctgctgttgaacgacaacgcgccgaatgtggcgtcggatgacgaagtcgag
gaagaggcggaagtcgcgctttcgacggtcgactccgaatttggccgcacgaccgacccg
gtgcggatgtacatgcgcgaaatgggcaccgtcgagctgctcacgcgtgaaggcgaaatc
gagatcgcgaagcggatcgaggacggtctcaagcacatggtgatggcgatttcggcgtgc
ccgacgacgatcgccgacatcctcgtcatggccgagcgtgtggcgaacgacgatctgcgc
atcgacgaactcgtcgacggcctgatcgatccgaatgccgaagacaccgacggcttctcg
gcgcaggaagccgaatcgatcgagaacgagaacgaggcagccgaggaagaggacgaggaa
gaagaggaggaggacgacggcgcggcgcaggcaacggccaatgcggcgcagctcgaggcc
ttgaagcgcacctcgctcgacaagttcgcgctcatcagcgagtggttcgacaagatgcgc
cgagccttcgagaaggagggctacaagtcgaagtcgtacctcaaggcgcaagaggcgatt
cagaacgaactgatgtcgatccgcttcaccgcgcgcaccgtcgagcgcctgtgcgacacg
ctgcgtgcgcaggtggacgaagtgcgtcaggtcgagcgtcagattctgcacatcgtcgtc
gacaagtgcggcatgccgcgtgcggagttcatcgcgcgcttcccgagcaacgaaacggac
ctggactgggccgagaagatcgttgccgagagccacccgtacagcgcggtgctctcccgc
aatattcccgcgatccgcgagcagcagcagcgtttgctcgacctgcaggcgcgcgtggtg
ctgccgctgaaggatctgaaggaaacgaaccgtcagatggcggccggcgaattgaaggcg
cgtcaggccaagcgtgaaatgaccgaggcgaacctgcgtctcgtgatttcgatcgcaaag
aagtacacgaaccgtggcttgcagttcctcgacctgattcaggaaggcaacatcggcctg
atgaaggcggtggacaagttcgaatatcgtcgcggctacaagttctcgacatacgcaacg
tggtggatccgccaggccattacgcgttcgatcgcggaccaggcgcgcacgatccgtatt
ccggttcacatgatcgagacgatcaacaagatgaaccgtatttcgcggcagatcctgcag
gaaacgggcctcgagcccgatccggctacgctcgccgagaagatggaaatgcccgaggac
aagatccgcaagatcatgaagatcgcgaaggagccgatctccatggaaacgccgatcggg
gacgacgacgattcgcatcttggcgatttcatcgaggatacgaacacggttgcgccgtcg
gatgccgcgttgcacgcgagcatgcgcgacgtggtgaaggacgtgctcgattcgctgacg
ccgcgcgaagcgaaggtgctgcgcatgcgcttcggtatcgagatgagcaccgatcacacg
ctcgaagaagtgggcaagcagttcgacgtcacgcgcgagcggattcgccagatcgaggcc
aaggcgctgcgcaagctgcgtcatccgagccgctcggataagctcaagtcgttcctcgaa
ggcagctaa
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