Trinickia caryophylli: U0034_27355
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Entry
U0034_27355 CDS
T09722
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
tcar
Trinickia caryophylli
Pathway
tcar02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
U0034_27355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcar03021
]
U0034_27355
Transcription machinery [BR:
tcar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
U0034_27355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r1_1
Sigma70_r4
Sigma70_ner
Sigma70_r1_2
GntR
Motif
Other DBs
NCBI-ProteinID:
WQE14389
LinkDB
All DBs
Position
2:complement(1866132..1868153)
Genome browser
AA seq
673 aa
AA seq
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MSLARWLASCARSIRPIASGSVSSKQCSRRSVRSTENLRTAPARSITPDRRAVRTRHRYG
ERHSKRRDEDERPPGRIEMLVDYEPDDLAADMPAATEDVYTGSSLHTKPRRSRPPSPRRF
SAAARERSEQQQQMQALIELGKAQGFLTHAQINDCFPGNFAQSPALGIVVDAFKDMGIAV
YEQMPDAETSLLNDMMHGAASDEQIIEEAQDTLSTVDAEFGRTTDPVRMYMREMTSAELL
TREQEVEIGRRIENGYNEIVRAISGCPSIVRTLLEDVELVRAGKMRIDALIDGLSDDEGP
REIPGAPIPVQAVRGVDSADTIDTEDAFERDPAKADGDEATLQALTHACLAIFSSVRTLS
ERLAAEHNAGEPAAVNACLAIQTELARMRFTTQAIDRLREELAGIETHPGLPLTRLQEIK
RIVRVSESGIQRAKRELTEANLRLVVSIAKRYINRGMPFLDLVQEGNIGLLRAVDKFEYR
RGWKFSTYATWWIRQAVTRALADHTRLIRLPVHLVDAIHRLRRIEREVRQQTGRNPSLRV
LAARMKLPESKVRTLLKADRQILSLDSPVGTLDSDESMVDLMEDPHADSPLDAATRARMR
VALNEALDRLPAREAKILRIRYGIDTGTGSTLDDLGKLFKMTRERIRQIESRALGRLQLP
EEAKKLKEFLTSD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcgcgcgctggttggcaagttgcgcgcgctcgatccggccgatcgcctcgggt
tcggtgtcatcgaagcaatgctcgcgcagatcggtccgcagcactgagaacctgcgcaca
gcgccagccagaagcattacgccggatcgtcgagctgttcgaacacggcatcgatatggc
gaacgacacagcaaacggcgtgacgaagacgaacgccccccggggagaattgaaatgttg
gtcgactatgagccagacgatcttgcagcggacatgcctgcggcgacagaagatgtgtac
accggcagctcactgcatacaaagccgcgacgcagcaggccgccgtcgccgcgacgtttt
tccgctgccgcgcgcgaacgctcggaacagcagcagcagatgcaggcgttgatcgagctc
ggaaaggcgcagggcttcttgacgcatgcacagatcaacgattgttttccgggcaatttc
gcgcaatcgccggcactgggcatcgtggtcgacgcgttcaaggacatgggcatcgccgtg
tacgagcagatgcccgatgcggaaacatcgctgctcaatgacatgatgcacggtgcggcg
tccgacgagcagatcatcgaggaggcacaggataccctgtcgacagtcgatgccgaattc
ggccgcacgacagaccctgtccggatgtatatgcgcgaaatgacctccgccgagctattg
acgcgtgagcaagaggttgagatcgggaggcgcatcgagaacggttacaacgaaatcgtc
cgcgcaatctccggctgcccttcgattgttcgtacactgctcgaggacgtcgaactcgtc
cgtgccggaaagatgcgcatcgacgcattgatcgacggcctgtccgacgacgaaggaccg
cgtgagataccgggcgcgcccattcctgtgcaggcggtgcgaggcgtcgattccgccgac
accatcgacacggaagacgctttcgagcgcgacccggcgaaggcggatggcgacgaagcg
acgctgcaggctctgacccatgcctgcctcgcgattttctcgagcgtgcggacactgtcg
gaacgactggcggccgaacacaacgccggcgagcctgcggcagtcaacgcctgcctggcg
atccagaccgaactggcgcgcatgcgcttcaccacgcaggcgatcgaccgcttgcgcgag
gaactggccggtatcgaaacgcatccgggcttgcctctgacgcggctgcaagaaatcaaa
aggatcgttcgcgtgtcggagtccggcatacagcgcgccaagcgggaactgaccgaggcc
aacctcaggctcgtcgtctcgatcgcaaaacgatacatcaaccgcgggatgccgttcctc
gatctggtccaggaaggcaatatcggcttgctgagagcagtcgacaagttcgaataccgg
cgtggctggaagttttccacctacgcgacctggtggatacggcaggcggtcacacgcgcg
cttgccgaccatacgcgcttgatccggctcccggtgcatcttgtcgatgccattcacagg
ctgcgccggatcgagcgggaggtccggcaacagacggggcggaatcccagcctgcgggtc
cttgccgctcgcatgaagctgccggaatccaaggttcggacactcctgaaagccgatcgc
cagatcctttcgctcgattcgccggtcggcacgctcgactccgacgaatcgatggtcgac
ctgatggaagacccgcatgcagactccccgctcgacgccgcgacccgcgcgcgcatgcgc
gtcgcgctcaacgaggcgctcgaccggttgcctgctcgcgaagccaagatactgcggata
cgctacggcatcgataccggaacgggcagcacactcgacgatctcggcaagctgttcaag
atgacacgggaacggatccgccagatcgagagccgcgcgctcggtagactgcagctcccc
gaggaagccaaaaagctaaaagaatttctgacatccgactga
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