Trinickia caryophylli: U0034_28345
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Entry
U0034_28345 CDS
T09722
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
tcar
Trinickia caryophylli
Brite
KEGG Orthology (KO) [BR:
tcar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcar03400
]
U0034_28345
Enzymes [BR:
tcar01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
U0034_28345
DNA repair and recombination proteins [BR:
tcar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
U0034_28345
Prokaryotic type
U0034_28345
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Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
OprF
Motif
Other DBs
NCBI-ProteinID:
WQE14574
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All DBs
Position
2:2076956..2078485
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AA seq
509 aa
AA seq
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MKDAKKPLAAAPKTRETGLVWFRRDLRLDDHAALHYALAECNHVACVFVFDTTILEPLLQ
RKRVRGRDRPPADRRIEFILASLQDLERALRRWGARLVVLHADPRKAIPRLAEALDADAV
YANRDYEPAAIERDAFVATALRRAGREWRDFKDQVVFEGDDVLSTQAKPYTVFTPYRNAW
HKRLMAGHLDPYHVAPRDGQLLAPPRVEGEAPAWELDALGFSPSNFAELKLPAGMSGARA
LIEDFEQRIERYAAQRDFPAVKGPSYLSVHLRFGTVSIRALVRMAKSLSLQPSGQGATAW
LNELVWREFFFMILSHHPRLARGASFRPECDALRWEHGARADAHFAAWCEGRTGYPLVDA
GMRQLVRTGYMHNRLRMVTASFLVKDLGIDWRLGEQFFAEHLNDFDFAANNGGWQWAAST
GCDAQPWFRIFNPVTQSKEYDPQGAFIRKYVPELQTLPASAIHAPWMVRGASGALPEVDY
PPPIVDHAEARQQTLARFGAIAGAGVRAR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgcgaaaaagccgctcgcggcggcacccaaaacgagagaaaccgggttggta
tggttccggcgcgatttgcgcctcgacgatcatgcggcgctgcattacgcgctcgccgaa
tgtaatcatgtcgcctgcgtgttcgtattcgatacgacgatcctcgagccgctgttacag
cgcaagcgggtgagggggcgcgatcggccgccggccgatcgccgcatcgagttcatcctt
gcttcgttgcaggatctcgaacgtgcattgcggcggtggggcgcgcgcctggtcgtgttg
catgcggatccgcgcaaagcgatcccgcggctcgccgaggcgctcgatgccgatgccgtc
tacgcgaatcgcgattacgagccggcggcgatcgaacgggacgctttcgttgcgactgcc
ctgaggcgggcggggcgggagtggcgcgacttcaaggaccaggtcgtgttcgagggcgac
gatgtgctcagcacgcaggccaagccctatacggtgtttacaccttaccgcaacgcatgg
cacaagcggctcatggctggccacctcgacccttaccacgtcgcgccgcgcgatgggcag
ttgctggcgccgccgcgggtcgagggcgaagcacccgcatgggagctcgacgcacttggg
ttttcgcccagcaacttcgccgaattgaaactgccggccggcatgagcggtgcgcgcgca
ttgatcgaggacttcgagcagcgcatcgagcgttacgcggcgcagcgcgattttccggcc
gtgaaagggcccagctacctctcggtgcacctgcgtttcggcacggtctcgatcagagcg
ctcgtgcgtatggcgaagtcgctgtcattgcagccgtcggggcagggtgcaacggcatgg
ctcaacgaactcgtgtggcgtgagttctttttcatgatcctctcgcatcatccgcggctc
gcgcgcggtgcatcgttcaggcccgagtgcgatgcgcttcgatgggagcacggcgcgcgc
gcggacgcgcattttgccgcctggtgcgaagggcgcacgggttatccgctcgtcgatgcg
ggcatgaggcaactcgtgcgcacgggatacatgcacaaccgcctgcggatggtgacggcg
agctttctcgtgaaggatctcgggatcgattggcggctcggcgagcagttctttgccgag
catttgaacgatttcgatttcgccgccaacaacggcggctggcaatgggcggcgtccacc
ggttgcgatgcgcagccctggttccggatcttcaaccccgtgacgcaatcgaaggagtac
gacccgcagggtgcattcatcagaaagtacgtgcccgagttgcagacgttgcctgcctcg
gccatacatgcaccgtggatggtgcgcggcgcgtcgggtgctttgcccgaagtcgattat
ccgcctccgatcgtcgaccacgccgaagcgcgccagcagacactggcgcgcttcggcgcc
atcgccggcgccggggtacgcgcgcggtag
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