KEGG   Theobroma cacao (cacao): 108663471
Entry
108663471         CDS       T02994                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03018  RNA degradation
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108663471
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108663471
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcc03019]
    108663471
   03041 Spliceosome [BR:tcc03041]
    108663471
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108663471
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108663471
Spliceosome [BR:tcc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108663471
 Complex C
  U2 snRNP components
    108663471
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 108663471
NCBI-ProteinID: XP_017983243
UniProt: A0AB32WUN6
LinkDB
Position
1:complement(30127485..30130167)
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttttcatatttcaaggacttggtgggaagagaagtgacggtggagttgaag
aatgatttggcaattagaggaacccttcactctgttgatcaatacctcaatatcaagctc
gagaacactagggttgtcgatcaagacaagtatcctcacatgctttcagtgaggaactgt
tttatcagaggctcggttgtgagatatgtccagctacctcctgatggtgttgacattgaa
ttgcttcatgatgccacaagaagagaagctcggggaggctga

DBGET integrated database retrieval system