Theobroma cacao (cacao): 18585707
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Entry
18585707 CDS
T02994
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03082
ATP-dependent chromatin remodeling
tcc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18585707
03083 Polycomb repressive complex
18585707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcc03036
]
18585707
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
18585707
Histone modification proteins
HAT complexes
HATB complex
18585707
HDAC complexes
Sin3A-HDAC complex
18585707
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
18585707
PRC2.2
18585707
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
18585707
Heterochromatin formation proteins
Other heterochromatin formation proteins
18585707
Chromatin remodeling factors
NuRD complex
18585707
NuRF complex
18585707
NuRF complex (fruit fly)
18585707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_RIG_1st
WD_LRWD1
eIF2A
MIOS_WD40
Beta-prop_HPS5
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
18585707
NCBI-ProteinID:
XP_007008719
UniProt:
A0AB32UKY0
A0A061FSL6
LinkDB
All DBs
Position
10:77522..80048
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLQDSENDARHYDHDRSDLGGFGCASGKVQIIQ
QINHEGEVNRARYMPQNPFIIATKTVSAEVFVFDYSKHPSKPPLDGACSPDLRLRGHSTE
GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDATQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLLIWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDIPGDES
TKGS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaggacgaggaagaaatgcgtggagagattgaggagaggctgatcaacgaagag
tacaagatttggaaaaagaacactcctttcctctacgatctggtcattacacacgccctt
gagtggccctctctcaccgtcgaatggcttcccgaccgcgacgagcctcccggcaaggac
tactccgttcaaaagatgatcttgggcacccacacctctgaaaacgagcccaattacctc
atgctggcccaggtccagctccccctccaggactctgagaacgacgctcgccactacgac
cacgaccgctccgatctcggtggcttcggatgcgccagcggcaaggtccaaattattcag
cagatcaatcacgaaggggaggtcaatagggctcgttatatgccccagaatccttttatt
atagccaccaagaccgtcagcgctgaggtttttgtgttcgactacagcaagcatccgtcc
aagccacctttggatggggcatgcagtcctgatttgaggctccggggccatagcactgag
gggtatgggctgtcctggagtaagttcaagcaaggccatttgcttagtgggtctgatgat
gctcagatttgtttatgggacatcaacgccactcccaagaacaagtctcttgatgctacg
cagatcttcaaggtccacgagggcgtcgttgaagacgttgcctggcatctcagacatgag
tatttatttggttccgttggggatgaccaatacctacttatttgggacctgcgaacccca
tctgtcaccaagcctatccagtccgtagttgctcaccagagtgaggttaactgcttagct
ttcaatccctttaatgagtgggttgtggccacgggttctactgataagacggttaagtta
tttgatctccgcaagatcagtacggcactccacacctttgatagccacaaggaggaggtt
ttccaagttgggtggaatccaaagaatgagacaatcttagcatcctgttgtcttggtaga
aggctcatggtgtgggatcttagcaggattgatgaagaacagacaccagaggatgctgaa
gacggtccacctgagttgctcttcattcatgggggtcacaccagtaaaatttctgatttt
tcgtggaacccatgtgaagattgggttattgctagtgtagctgaagataacattcttcaa
atatggcagatggcagagaatatttaccatgatgaggatgacataccaggagatgaatcc
accaaaggttcttaa
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