Theobroma cacao (cacao): 18585788
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Entry
18585788 CDS
T02994
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
18585788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18585788
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
18585788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
18585788
NCBI-ProteinID:
XP_007008852
UniProt:
A0AB32UL59
LinkDB
All DBs
Position
10:461737..469513
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AA seq
1254 aa
AA seq
DB search
MRKRQLYQSKHPFNTYPFEVLFCGSWQAVELIRIKNGVMTMHLIDDQYLIEKQPFSDFRV
KSRQATLSDCTCFLRPGIDVCILSASPLTGINEENPEPVWVDAKISSIERKPHNSQCSCQ
FYVNLYVNQGPLGSEKVILSKETEVVGIDQISVLQRLEKHACDDQHYGWNFSEDCSELRR
TKIFLGKFLSDISWLLVTSVLKRIAFDVRSVQNKIVYQILGEDDSSPLNSHNYLHAVNFK
VDNGISVSDVVRLDPHQNNEAGAACSAHEIRQWPVYDAMNLRRSKRRNVQPERFLGCDSS
LETDISWVRTAPLRTGNWREEEDMNLPLSYLFGMNASTSKELTQCETSDVCKSKNISREF
KSDVAGPRKSSVNYPRRSGATNPRKHQNSLAIVPVSSESDPLASGHCHAPKFPRSHAEEV
EKVSLNYYSVKRSRTTHRKKIPALEYMDYESTWKGRSFSKKGQNKSHRSVHTRKEDYDEP
ITYKRTTISAGAYNKLINSYMKNIDSTFTKEEPHIIDQWNQFKEAASSEMSRKTEPEQPS
VEDEGDMSDTEILWREMELCMASAYFEEDEARVSAESLRKSSGNCQHDFKLDEEIGVLCR
ICGFVRTEIKYVSAPFLEHKSWIADGKVCSEEEPEHKTDGDEALNLFCNYTSIDTPLSEE
NDNVWALIPELKKKLHFHQKRAFEFLWQNVAGSLTPALMETASKKTGGCVVSHSPGAGKT
LLIIAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVHLIHGRRTYRVFKKQS
VRLHGAPKPSQDVMHVLDCLEKIQKWHAQPSVLVMGYTSFLTLMREDSKFEHRKFMAKVL
RESPGLLVLDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKF
VYEVLRELDPKSKKKKSQFDKARNLLENRARKFFIDKIARKIDSSEGEERLHGLNMLRNI
TNGFIDVYEGGNSDSLPGLQIYTLMMNSTDVQHEILVKLHKIMAGYSGYPLELELLITLA
SIHPSLVRTSNCVNKFFSPEELMALEKIKFDFKKGSKVMFVLNLVYRVIKKEKVLIFCHN
IAPINLFIELFEIVFRWRKGREILVLTGDLELFERGRVMDKFEEPGGASRILLASITACA
EGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKVVFVYQLLATGTLEEDKYRRTTW
KEWVSSMIFSEAFVEDPSRWQAEKIEDDVLREIVAEDKVKSFHMIMKNEKASTG
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaggcagttatatcaatccaagcatccatttaatacatatccttttgaggtc
ctcttctgcggttcatggcaagctgtggaactcataagaattaagaatggggtcatgact
atgcatctgatagatgatcaatatctgattgagaaacaaccattctctgattttcgtgtt
aagtctaggcaggcaactttatctgactgcacctgctttttgaggcctggtattgacgta
tgcattctttcagcctctccgctgacagggattaatgaagagaatccagagcctgtttgg
gttgatgctaaaataagttcgatcgagaggaagccccacaactctcaatgctcctgccag
ttttatgttaacttgtatgttaatcaaggtcctcttggttctgagaaagtaattttgagc
aaagagactgaagtagtaggaatcgatcagatttctgtcctccaaaggcttgaaaagcat
gcatgtgatgatcagcactatggatggaatttctctgaggactgctctgaattgagacga
actaagatatttttggggaaattcttatctgatatatcatggttgcttgttacatctgtt
ttgaagcgaattgcatttgatgtgagatctgtgcagaacaagattgtctatcaaattctg
ggagaagatgatagcagtcccttaaattctcataattatctccatgctgtaaatttcaag
gtagacaatggtatttccgtatccgatgtggtccgacttgacccccaccaaaataatgaa
gctggtgctgcttgtagtgcacatgagatcagacaatggccagtttatgatgctatgaac
ttgcgacgctctaaacgcaggaatgtacaacctgagcgtttccttggttgcgatagttct
ctggagacagatattagctgggttcgaacagctccattgagaaccggcaactggagagaa
gaggaagatatgaacttaccactatcatacttgtttggcatgaatgcaagtacttcaaaa
gagcttacccagtgcgaaacaagtgatgtgtgcaaaagtaagaatatatcaagggagttc
aaatcagatgtggctggcccaaggaaatcaagtgtgaattatccaaggagatcaggtgcg
actaatccaaggaagcatcaaaatagtcttgctattgttcctgtgtcttctgaaagtgat
cctcttgcctctggacactgtcatgccccaaaatttccaagaagtcatgcagaagaggtt
gaaaaagtatctttgaattattatagtgtgaaacgctctcgtacaactcataggaagaaa
attcctgctttagaatatatggattatgaaagtacatggaagggaagatctttctcaaag
aaaggacagaataaaagtcatcgttctgttcatacaagaaaggaagattatgatgagcca
ataacttacaaaagaacaacaataagtgcaggtgcatacaataaactgattaattcatat
atgaagaacattgattctacattcacaaaagaagagccgcacattattgatcagtggaat
cagtttaaggaagcagcatcctcagaaatgagtagaaaaacagaaccagaacaaccctct
gttgaggatgagggagatatgtcagatactgaaatattgtggagagaaatggaactatgt
atggcatcagcttactttgaggaagatgaggctagagtatctgctgagtctctgcggaaa
tctagtggaaattgtcagcatgatttcaaactggatgaagaaattggggttctatgtcgt
atctgtggctttgtgagaactgaaataaaatatgtttctgcaccatttctggaacataaa
agctggatagcagatggtaaagtttgcagtgaagaggagccagagcataaaacagatgga
gatgaggccttgaatcttttctgcaattacacttctatagatactccattatcagaagaa
aatgacaatgtgtgggccctaatccctgaacttaagaagaaattacacttccaccagaaa
agggcctttgaattcttatggcaaaacgttgcgggttctttgacacctgcacttatggaa
acagcatctaaaaaaacaggtggttgtgtagtttctcattcaccaggagctggaaagact
cttctcattattgcattccttactagctacttgaagttattcccaggaaagaggccattg
gtccttgctccgaagacaactctatacacctggtataaggaatttatcaagtgggaaatt
cctatacctgttcatttgattcatggacgtagaacttatagagtcttcaagaagcagtca
gtaaggctgcatggagctccgaaacctagtcaagatgttatgcatgttttggattgtcta
gagaaaatacagaagtggcatgcacaaccaagtgttcttgttatgggttacacctcattc
ctgacattaatgcgagaagattcaaagtttgagcacagaaagtttatggctaaagtgctt
cgtgaaagtccagggctcctggtattggatgaagggcacaaccccagaagtactaaatca
aggttgagaaaggttttgatgaaagttgaaacggatctgaggatattgctttcgggcaca
ttgtttcagaacaacttctgtgaatattttaacaccttgtgcctagcaagaccaaaattt
gtgtatgaagtgttgagggaattggaccctaaatccaaaaagaagaagagtcagtttgac
aaggcacgcaatttgttagagaacagagcaagaaaattcttcatagacaaaattgccagg
aagattgattctagcgaaggagaagagaggttgcatggtcttaacatgttgagaaacatc
acaaatggatttatcgatgtgtatgaaggtgggaattcagacagcctccctggtttacaa
atttacaccttaatgatgaactcaacggacgtacaacatgagattttggtgaaacttcac
aaaataatggctggatatagtggctatccgttggaactggaacttttgataactcttgca
tcgatacatcctagtttggtcaggacttcaaactgtgttaataagtttttcagtccagaa
gagttgatggcacttgagaagatcaagtttgattttaagaaagggtccaaggtgatgttt
gttttgaaccttgtttatcgagtcatcaagaaggaaaaggttctcattttttgccacaat
attgcccccattaatttgtttatcgaattatttgagatagtttttcgatggcggaagggt
agagaaatattggtccttacaggagacttggagctatttgaaagaggacgagtgatggac
aagtttgaggaaccaggtggcgcttcaaggatactacttgcttcaattacagcgtgtgct
gaaggcattagtttgacagctgcatcgcgggtgattttattggattcagaatggaatcct
tccaagacaaagcaggctattgcacgggcttttcggcctggtcagcaaaaggttgttttt
gtctatcagctcttggcaacaggcacacttgaagaagataagtaccgtaggaccacatgg
aaggaatgggtatcaagtatgatttttagtgaggcatttgtggaggacccgtctcgctgg
caagcagaaaagatcgaagatgatgtattgagggagatagtggcagaggacaaagttaag
tcgttccatatgattatgaaaaatgaaaaggcttctactggttga
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