Theobroma cacao (cacao): 18586083
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Entry
18586083 CDS
T02994
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18586083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18586083
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18586083
Spliceosome [BR:
tcc03041
]
Complex A
U2 snRNP components
U2 related factors
18586083
Complex B
18586083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
18586083
NCBI-ProteinID:
XP_017984658
UniProt:
A0AB32X296
LinkDB
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Position
10:complement(2009876..2015917)
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AA seq
1105 aa
AA seq
DB search
MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEKHRERGRERKEREREKEKERE
RAREKERERDREKREREREREREREKRERERERERERKEEKEKGXRKSREREKRREYNSD
DSKEERERHRKRRRRERDDDNNDDYKERESKLNREESPVRKKSGDDELEKEEKKSREEEM
EDEQRKLDEEMEKRRRRVQEWQELRRKKEESEREKRGEGNAEDEETKVGKAWTLEGESDD
DEVAPTKLETNMDVDENENSNSKPDSKGIGDAMMEDGDSDNGEDKMLVTQNGGNGISEED
DEIDPLDAFMNSMVLPEVEKLSNAVVVPPTTADDDKNGNLKKDKKDGLSNGGQQPKKGSN
KALGRIIPGEDSDSDYGDFENDEEDLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFR
KNFYIEVKEISRMTPEEVAAYRKELELKLHGKDVPKPVKTWHQTGLTSKILETIRKLNYE
KPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAP
TRELVQQIHSDIKKFTKALGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS
GGKITNLRRATYLVLDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK
VLNKPVEIQVGGRSVVNKDITQLVEMRPESERFLRLLELLGEWYEKGKILIFVHTQEKCD
ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN
FDVPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQVLPDDLKALA
DGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEG
VRKAGGDISQQTALAQIAAMAAASKAGTALMQNPLSSAQLLPNAVLPVSLPGVLGVSMPG
TAAVVPGSGLPGLANEEAARKAALQAALNLQHNLAKIQADAMPEHYEAELEINEFPQNAR
WKVTHKETLGPISEWTGAAITTRGQFFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELK
RVLEDFSHQSLQLPGGTQPGRYQVL
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggaagattcagaaaagagaaggcatcgtgagaggagggatagggatagggatagggac
cgagaacgacgccgttccgagagagagaagagtagtgattcggatagggaaaaggaaaag
catcgagagagagggagagagaggaaagagagggaacgagagaaagagaaagagagggaa
agagcgagggagaaggaaagagagagggatagagagaagagagagcgtgaaagagagcgg
gaaagggagcgggaaaagagggaaagagaaagagaaagggaaagggaaaggaaggaagag
aaagagaaagggnagaggaagtcgagggaaagggagaagcggagggaatataacagtgat
gatagtaaggaggagagggagcgacataggaagcgtcgaaggagggaaagagatgatgac
aacaatgatgattataaggagagagagagcaagttgaatagagaagagagtcctgtaagg
aaaaaaagtggtgacgatgagttggagaaggaggagaagaaaagcagggaagaggagatg
gaagatgaacagcgtaaattagatgaggagatggagaaacggaggaggagggttcaggag
tggcaagaattgaggaggaagaaggaagagtcagagagggagaagcgtggggaaggaaat
gcagaggatgaggagactaaggttggtaaggcttggactcttgaaggagaatcggatgat
gatgaagtagccccaacaaagttggagacaaatatggatgttgatgagaatgaaaactcg
aattctaagcctgatagtaagggaattggagatgcaatgatggaagatggagattctgac
aacggagaagataaaatgcttgttacccaaaatgggggtaatgggatttcagaggaggac
gatgaaattgatccgttagatgcttttatgaattcaatggtgttacctgaagttgagaag
ctaagtaatgcagttgttgttccccctacaactgctgatgatgataaaaatgggaacttg
aagaaggataaaaaagatggcttgagtaatgggggacagcagccaaagaaaggttcaaat
aaggcacttgggagaattattcctggggaagattcagattcagattatggggattttgag
aatgatgaagaggatttagaagatgaagatgatgatgagtttatgaaaagggtaaagaag
accaaagctgaaaaactatcaattgttgaccactcaaagattgattataaaccgttcagg
aaaaatttttatattgaagtgaaggagatctcgagaatgacacctgaagaagttgctgct
tacaggaaggaattggaattgaagttacatggaaaagatgtgccgaaaccagtcaagact
tggcatcaaactggactgactagtaaaatattggagacaataaggaaacttaattatgag
aagccaatgccaattcaagctcaggcactgcccataattatgagtggtcgagactgcatt
ggcattgcaaaaaccgggtctggcaagacccttgcttttgtgctaccaatgttaaggcat
atcaaagatcagccgcctgtagtagctggagatgggccaattgggctcattatggcacct
acaagggagcttgtccagcagattcatagtgacataaagaagtttaccaaggcattagga
atcaggtgtgtccctgtctatggaggttctggtgttgctcagcagattagtgaattaaag
cggggaacagagattgtcgtatgtactccaggtaggatgattgatatactttgtactagt
ggaggaaaaattactaatctgcgtagagcaacatacttggttttggatgaagctgacaga
atgtttgatatgggttttgaacctcaaatcactcgaattgttcaaaatattcgccctgat
cgccaaactgtactattttctgccacttttcctcgccaggttgagattttggcacgtaaa
gtgttgaataaacctgttgaaatacaggttggtgggagaagtgttgtgaacaaggacata
actcagttggttgagatgaggccagaaagtgaaaggttcctaagattgttagaacttcta
ggtgaatggtatgagaaggggaaaattctgatttttgtccacacccaagaaaagtgtgat
gctttgtttagggatttgctcaaacatggttacccttgtctatcacttcatggggccaag
gatcagacagatcgtgaatccaccatttctgattttaagagcaatgtctgcaatttgttg
attgcaacaagtgttgcagctaggggtttagatgtgaaggagcttgaattagtgattaat
tttgatgttccaaatcattatgaagattatgttcaccgtgtaggtaggacaggtagagct
ggccggaaaggctgtgccatcacatttatctccgaggatgatgcaagatatgcaccagat
cttgtaaaagctttggaactctctgagcaagttcttcctgatgacctgaaagctcttgct
gatggctttatggcaaaagtcaatcaggggcttgagcaggcccatggaacaggttatggt
ggaagtggttttaaattcaatgaagaggaggatgaaaagagaaaagcagcaaagaaagca
caagcaaaagaatatgggtttgaggaagacaagtcagattcagaagatgaagatgaaggg
gtgcggaaggcaggtggtgacatctcacaacagacagcacttgctcagatagctgccatg
gctgctgcctcaaaagctggtaccgctttgatgcagaaccctctatcatctgcccaactg
cttcccaatgctgtattgcctgtgtctcttcctggtgtactcggtgtttcgatgccaggt
actgcagcagttgtgcctgggagtgggctgcctggtcttgcaaatgaagaggctgctcgc
aaagctgcactgcaagctgctctcaatttgcagcataacttagcaaagattcaagctgat
gcaatgcctgaacattatgaagctgagttggagataaatgaattcccccagaatgctcga
tggaaggttacccacaaggaaactttgggcccaatatcagaatggactggagctgccatt
actaccaggggccaatttttcccacctggtcgaatcccgggaccaggggaacgcaagctt
tacttgttcattgagggacctactgagctatctgttaagagagctaaggcagaactaaaa
cgtgtcttggaagacttctcacaccagtccttacaacttcctggtgggactcaacctggc
agataccaagttttgtag
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