Theobroma cacao (cacao): 18586892
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Entry
18586892 CDS
T02994
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03030
DNA replication
tcc03410
Base excision repair
tcc03420
Nucleotide excision repair
tcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18586892
03410 Base excision repair
18586892
03420 Nucleotide excision repair
18586892
03430 Mismatch repair
18586892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tcc03032
]
18586892
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18586892
DNA replication proteins [BR:
tcc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
18586892
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
18586892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
RCF1-5-like_lid
AAA_22
AAA_30
AAA_19
Rad17
BRCT_2
RuvB_N
AAA_assoc_2
AAA_18
nSTAND3
Gp44_lid
AAA_24
AAA_5
Sigma54_activ_2
Zeta_toxin
AAA_28
AAA_14
NTPase_1
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
18586892
NCBI-ProteinID:
XP_017985217
UniProt:
A0AB32X009
LinkDB
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Position
Un
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AA seq
957 aa
AA seq
DB search
MSDIRKWFMKAHDKGKGNASKPANPAPTNTDSVPGGRENSGRRKTSKYFPAGKQQPKGEQ
GTEELPAKRKVQNENESVEKPPPSKKPSKVGIDDDFVLPKSRNTVDVTPSKKRKSGSGRG
VAQKAEDNDESDEDDAKDLESPVKSGGRGGRGGTGASVAPASGRGRGRGRGGFMNFGERK
DPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITTAVSKKTNYLL
CDEDIEGRKSSKAKELGIPFLTEDGLFDMIRASNCGKAHSKEESKKSAESFAASLPKKSP
QKMEVKSNSSSAKISGKSLTTSVSSTKQRGQPIQHSSLTWTEKYRPKVPNEMTGNQSLVN
QLHNWLAHWNEQFLGTGSKGKGKKQNDPGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQTI
EVNASDSRGKADAKISKGIGGSNANSIKELVSNEALSVNMDRSKHVKTVLIMDEVDGMSA
GDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVA
NAEGLQVNEIALQELAERVNGDMRMALNQLQYMSLSMSVIKYDDIRQRLLSGSKDEDISP
FTAVDKLFGIYGGKLRMDQRIDLSMSDPDLVPLLIQENYINYRPSSIGKDDSGMKRMNLI
AQAAESIGDGDIINVQIRRYRQWQLSQAGSLSSCIIPAALLHGQRETLEQGERNFNRFGG
WLGKNSTMSKNYRLLEDLHVHILASRESSSGRETLRLDYLTVLLTQLTNPLRDKPKDEAV
KQVVEFMNAYSISQEDFDTVVELSKFQGQSNPLEGIPAAVKAALTKAYNEGSKTQMVRAA
DLVTLPGMKKAPKKRIAAILEPSDDVLGEENGDTLPESEEKSSDTEDLEGTTDGETLRAE
LQSLNSKGIEVQMELKGTGNSSAKKAPAGRGRGGKGASGSAEKKGGRGSGAGAKRKR
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatattaggaaatggtttatgaaagcgcatgataaaggcaaaggcaatgcctca
aagccggcaaacccggcaccaaccaatacagattctgtacctggaggccgagaaaattct
ggcagaaggaaaactagcaagtattttcctgcaggaaaacaacagccaaagggtgaacaa
ggaacggaggaacttccagccaagagaaaagttcaaaatgaaaatgaaagtgttgaaaaa
cccccaccttcgaagaaaccaagcaaagttggtattgatgatgactttgttttgcccaaa
tcaaggaatactgttgatgtcactcccagtaagaaacggaagagtggttcaggaaggggt
gttgcacaaaaagctgaagataatgatgaaagtgatgaagatgatgctaaggacttggag
tctcctgtaaagtctggtggaagggggggtcgtggtggcacgggtgcatcagtggcacca
gctagtggaaggggcagaggccgtggacgaggtggatttatgaattttggagaaaggaaa
gatcctcctcataaaggagagaaggaagtccctgaaggtgctcctgattgcttagctggt
ctaacttttgtaattagtggaacgcttgacagtttagaaagagaggaagcagaggacttg
atcaaacgccatggtggtcgtattactacagccgtcagcaaaaaaacgaattatctttta
tgtgatgaagatattgagggtcgaaagtcctctaaagccaaagagcttggcattcctttt
ctcactgaggatggattgtttgacatgatccgtgcttcaaattgcggaaaagctcattca
aaagaagagtcaaaaaaatctgcagaaagctttgctgcatctctacctaagaagagcccc
cagaaaatggaagtgaagagcaactcttcatcagcaaagatatctggtaaaagtttgact
acaagtgtctcatccacgaagcagagagggcaaccaatccagcattcatctctgacatgg
actgaaaaatataggccaaaagttccaaatgaaatgactgggaatcaatcattggttaac
caacttcacaattggttggcacattggaatgagcaatttcttggaactggaagtaaggga
aagggcaaaaagcaaaatgatcctggtgccaaaaaagctgtcctattgagtggaacacct
ggcattgggaaaactacatcagcaaagttggttagtcagatgctaggtttccagaccatt
gaggtaaatgctagtgatagtcgtgggaaggctgatgccaaaatttctaaaggaattggt
ggaagcaatgcaaattcaataaaggaacttgttagcaatgaagccttgagtgttaacatg
gatcgttcaaaacatgtaaagactgtcctgatcatggatgaggtggatggcatgtctgct
ggtgatagaggtggaatagctgatcttattgccagcataaaaatttccaaaatcccaatc
atttgcatctgtaatgaccgatacagtcagaaactgaagagtcttgtgaactattgcttg
cttctcagtttccgtaaacccacaaaacaacagatggccaagaggttgatgcaagttgca
aatgcagaaggtcttcaagttaacgagattgctcttcaggaacttgcagaaagagtgaat
ggagatatgcgcatggcccttaatcagctgcagtacatgagtctgtctatgtcagtcatt
aagtatgatgatataaggcagcgccttcttagcggttccaaggatgaagacatttcacct
ttcacagctgttgataagctttttggcatttatgggggaaagttgagaatggaccagcga
attgacctgagcatgagtgatcctgatctagttccacttcttattcaggaaaattatatc
aattataggccgagttcaattggtaaagatgacagtgggatgaaacgtatgaacttaatt
gcccaagctgctgagtctattggtgatggtgatataatcaatgtgcagattcgaagatat
cgacagtggcagctttcgcaagctggttccctctcatcatgcatcattcctgctgcattg
ttacatggacaaagggagacacttgaacagggagaacggaattttaatagattcggcggg
tggctagggaagaattcaactatgagtaaaaattataggcttttggaggatttgcatgtt
catattcttgcttctcgtgaatctagttcaggaagagagactcttcgacttgattacctt
acagttcttctgacacaattgactaatccgcttcgagacaagcctaaggatgaagctgtt
aagcaggttgttgagtttatgaatgcttactcaataagccaggaggattttgatacggtt
gttgagttatctaaattccaggggcaatcaaatccactggaaggcattccagcagctgtc
aaagcagctctgacaaaagcatacaatgaaggaagcaagacacaaatggtacgagctgcg
gatttagtaactcttcctggaatgaaaaaggcccctaagaagcgaattgctgcaatacta
gaaccatcagatgatgtattaggggaggagaatggtgacacattgcctgaaagtgaagag
aagtcttcagacacagaggacttggaaggaactaccgatggtgagacgctgcgggcagaa
cttcagagtctgaactccaaaggaattgaagtacaaatggagttgaaagggacagggaat
tcaagtgctaagaaggcaccagctggtagaggaagaggtggtaagggtgcttcaggatct
gctgaaaagaaaggtgggcgtggttcaggggcaggagcaaagagaaaaagatga
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