Theobroma cacao (cacao): 18586930
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Entry
18586930 CDS
T02994
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18586930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18586930
03012 Translation factors [BR:
tcc03012
]
18586930
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18586930
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18586930
Translation factors [BR:
tcc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
18586930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
AAA_23
Myosin_head
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
18586930
NCBI-ProteinID:
XP_007010588
UniProt:
A0AB32UMD6
LinkDB
All DBs
Position
10:15982147..15998204
Genome browser
AA seq
1142 aa
AA seq
DB search
MQNPKLRGLLLGFNFTHARANTLFDSLLFLLPSSSSSSSNARFCHPKRRRFCGYAAEQFS
DDEYECDFESHKASSSVANIDEWKWKLSMLLRSENDQEIVSRDKRDRRDYEQISNLANRM
GLYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVVPLGLQRRVEGLLQEYLDRLQLNSG
NVRDNSDNANSIDQAEYVNPDENPDYFLDNSVMEKVLQRRSLRLRNMQRAWQESPEGKKM
MEFRKSLPAFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIETGRGAFCSII
CTQPRRISAMAVAERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDR
NLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNYFGGAPK
IHIPGFTYPVRAHFLEDVLEFTGYKLTSFNQIDDYGQDKMWKMQRQLAPRKRKNQITALV
EDALNKSSFENYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDIS
CLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKSPPNIRKIVLATNMAEASITIN
DIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPRCVYE
AFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPLAVQNAVGFLKMIGALD
EKENLTSLGKFLSMLPVDPKLGKMLIMGAIFCCFDPVLTIVSGLSVKDPFLLPQDKKDLA
GTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSVYEYCWRNFLSAQTLQAIHSLRKQFSF
ILREAGLVDTDAGSNNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLY
ANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSMLMLFGGALSCGVQAGHLKMMQ
GYIDFFMDSSLAECYLKLKEELDRLIQKKLQDPSVDIHKEGKYLMLAIQELVSGDLCEGR
FVFGRESKKPKDSTDNSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEF
KGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNNQDEDDSPLDVTDNMLKLLGKRRRSK
RR
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatccgaagctaagaggtctccttttgggattcaatttcactcatgccagagcg
aacaccttgtttgattcactgctttttctactcccgagttcttcttcttcttcttctaat
gctaggttttgtcaccccaaacgacggcgtttctgcgggtatgcggccgagcaattctca
gatgatgaatacgagtgcgattttgagagccataaggcgtcttcttctgttgccaacatt
gatgaatggaaatggaaactcagcatgctgttacgcagtgaaaatgaccaagaaattgta
tctagagataaaagagataggagagactatgaacagatatcaaaccttgccaacaggatg
ggactttacagtgaaatgtatggaaaagtggttgttgcaagcaaggttcctcttcctaac
tataggccagatttggatgataagcggccgcaacgggaggttgttgtaccattaggcttg
caaaggagggttgagggtttactgcaagaataccttgatcgactgcagttaaattctggg
aatgtcagagacaattcagacaatgcgaattccattgatcaggctgaatatgtgaaccca
gatgagaatccagattatttcctggataattctgttatggaaaaggttcttcagaggagg
agtttgcgattgcgtaatatgcaaagagcttggcaggaatcacctgaaggcaagaagatg
atggaatttcgaaaatctctgcctgcattcaaggaaaaggaaaggctgcttcaggcaatt
gcacgtaatcaggtcatagtgatatcaggggagactgggtgtggcaagaccactcaactt
ccacaatatatattggagtcagaaatagaaactggtcgtggagcattctgtagcataatt
tgcacacagcctcgaagaatatctgcaatggcagttgcagaaagagtgtctgcagaaaga
ggagagcctctcggggaaacagttggttataaagttcgattagaaggaatgaaagggaaa
aatacccatctgcttttttgtaccagtggtattttactccgacggctgctaagtgaccgg
aacttgaatggtataactcatgtttttgttgatgaaattcatgaacgaggaatgaatgaa
gatttcctactgattgtgttgaaggatcttcttccacgtcgtcgagatttgaggttaatt
ttaatgagtgccactttgaatgctgagctcttctccaattattttggcggggcaccaaaa
attcacattccgggcttcacatatccagtcagggcacactttctggaagatgtgttggaa
ttcaccggatataagttgacttctttcaaccaaattgatgattatggccaagacaaaatg
tggaaaatgcagagacagcttgccccacggaaaaggaaaaaccagataactgctcttgta
gaggatgctctgaacaaatcaagctttgagaattatagttctagggcacgtgattctctg
gcatgttggatgcctgattgcataggattcaatcttattgaggcagttctatgccatata
tgccgaaaggaaagaccaggtgctgtgctagtatttatgactggttgggaagatatcagt
tgtttgagagatcaacttaaagctcatccccttttaggagatcctaacagggttctgctt
ctaacatgccatggttccatggcaacatctgaacagaaactaatatttgagaaatcacct
ccaaatatacgtaaaattgttcttgctacaaatatggcagaggcaagcatcacaatcaat
gatatagtttttgtggtagattgtggaaaagcaaaagagaccacttatgatgctttgaat
aatacgccatgtctgctaccttcctggatttctcaggcatcagcccggcaaaggaggggt
agggctggtcgtgtgcagccaggcgaatgctaccacctataccccagatgcgtttatgaa
gctttttctgagtatcaacttcctgaacttttaagaactcctttgaattctctctgcttg
caaataaaaagtttgcaggttgaaagcattggagaattcttgtctgcagctttgcaagca
ccagaacccttggctgtccaaaatgctgtcggttttctgaaaatgattggggcattagat
gagaaggaaaatctgacaagtctcggaaagttcttgtcaatgcttcctgtagatcccaag
ctagggaaaatgctaatcatgggtgctatcttctgttgctttgatcctgttttaacaata
gtgtctggacttagtgtcaaggatcctttccttttgcctcaagacaagaaggatttagct
gggacagcaaagtctagattttcagcaaaagactacagtgatcacatggctcttgtccgt
gcttatgaaggttggaaggatgcagaaagagaaggatcagtatatgagtattgttggagg
aacttcctgtctgcacaaactcttcaggctattcattctcttcggaaacaatttagtttc
attctaagagaagctggcttggtagacacagatgcaggctcaaacaataaattaagtcat
aaccagtctctggttcgtgctgtcatatgctctggactctttcctggaatagcatctgta
gtgcacagagagacatcaatgtcttttaaaaccatggatgacggccaagttttattgtac
gctaattctgtgaatgcacgttaccagactattccttacccatggttagtctttggtgaa
aaagtaaaggtcaacacagttttcatacgtgattccactggtgtatctgattctatgttg
atgctctttggcggtgctctaagctgtggggtacaggctgggcatttgaaaatgatgcaa
gggtatatcgatttcttcatggattctagcttggcagagtgctatttgaagctcaaagaa
gaacttgatagacttattcagaagaagcttcaagatcctagtgttgatattcacaaggaa
ggaaagtaccttatgcttgccattcaagagctagtgtctggagatctatgtgaagggaga
tttgtttttggccgtgaatccaagaagcctaaggattccactgacaacagtagattcaca
aaggatggaacaaatccaaagagcttgctacaaactttgttgatgagggcaggccactca
cctccaaaatacaagacgaagcatctaaagacaaatgagtttagggcactagtggaattc
aaaggaatgcagtttgtgggaaagcctaagaaaaacaagcagcttgcagagagggacgct
gctatagaggcattggcatggttgactcatacctctgacaacaatcaagacgaagatgac
tccccacttgatgtcaccgacaatatgctaaaacttcttgggaagcgtcgaagatcaaaa
cgccgatag
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integrated database retrieval system
