Theobroma cacao (cacao): 18587030
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Entry
18587030 CDS
T02994
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18587030
03036 Chromosome and associated proteins [BR:
tcc03036
]
18587030
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
18587030
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
18587030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
Spt6_S1
Tex_central_region
HHH_9
HTH_44
HHH_3
Tex_N
S1
S1_RRP5
Tex_YqgF
RuvX
Motif
Other DBs
NCBI-GeneID:
18587030
NCBI-ProteinID:
XP_007010739
UniProt:
A0AB32UMH5
LinkDB
All DBs
Position
10:complement(17349773..17360825)
Genome browser
AA seq
1666 aa
AA seq
DB search
MANFIVDDGISYGDRSPMRCFKMNQKKLKQVVTLCSSALNDVGPIIGDVNEILNRQKQVM
AINVKLDDSSEFEPFFLADKYMTERDNHVRETDMPERMQMIEEIVGPLPLDEMSREEESA
WVLNQLVMNSDLLFCTKRTTERSGEGSFLLNKIKKADIMKFLELHHVEKFDIPFIAMYRK
EQCRSLLDDIEQDEADSKANNDAGRACQLKWHKVLWVIKELDRKWLLHQKRKSALQLYQR
RRYDEECVNIDYSESYTLNKQLFQSISKSLNKAESEEEIDDVDAKFSLHFPPVEERMDGK
FKRPLRKSQYSNCMKAGLWKLASQFGYTSEQLGLQIALEKMDVDFQEYPEESPEEIALNY
TCTMFETPERVLKGARHMAALEVSCDPCIKKHIRSIFMNKAVISTRPTLEGNATIDCFHQ
FSGVKWLRDKPLSKFNDSQWLLIQKAEEEKLVQVYIKLPESTLNEVITGFNDAYLIDGAG
RAAQLWKEQCKLILHDALFNFLLPSMEKEARNLLTSRAKHMLLMEFGKELWKMISVGPYL
YNENFVGSVESVAPKVMSCCWGPGNPATTFVMLDSSGELLDVLEARSFNLRSQTIDAQQR
KKNDQQNVLKFMKNHQPHVIVIGAANASCVRLKDDVKEIVSKLEENLRDLGQAMNGISVV
YGDESLPQLYEHSQVSSDQLPGQPGIVKRAVALGRYLQNPLAMVAALCGVNREIVSWKLS
SLEHFLTPDEKYEMIEQVMVDVTNQVGVDINFAVSHDWYFPLLQFVSGLGPQKAALLQRE
IVGYRAVNNRKELASFGLKTKKVFHNAVGFLCVRGSHLPCTSFDIDLLDGTRIHPESYEL
AERLAKAVCDDITEAPIEYVKKEPQLLSSFNINDYXATYEIEEGENRRDTFYHIKKELLH
GFLDPREPYKVPSLDEEFNMICGKNGTALAEGSLVLAIVRHVESQRAFCVLDSGLTGIIM
KDDFSDEDGDFALEDKLHEGDKVSCKVKQIDKSTFQAFLTCKESELKRSRYEDILEVDPY
YHESGNILLNQQEKACMDEKLAKKHFKPRTISHPFFRNMTLDQAMEFLSDKDAGESIFRP
SSRGPSYLTLTLKVFDELYVNKDIVESGKDHKDMTSLLHLGKVLKIGNDKFRDLDEVRDR
YVIPLVKHLKEMLGFRKFKRGAKSEVDEVLRAEKLEYPMRVVYCFGISYEHPGTFILSYI
KSRNLHHEYVGLLPNGFKFRKQTFEKIEHLVGLFQKNIDRLQHTSLTLGNLAFGNSSGAC
TIGGLQGQLNCSKDRSISRGRSFYHGDGNDDGGKMHPSELPRPHNGSGHHSSNDGFNSFG
NEDKDPSQGAAAKWGSCSENQDRRNEKWGRTNNKLGNDIHFAPNNEDWPGGWSDGVGASG
RNWDSGDRRGSGGNWDRNDGTRNSGWSKGIGVDRTGEKWGQRGGRGSRGGCTSGWGSTKN
GDSSGSDEVWRASGNNVHVRGRAHTSGWGATKESESGGNFGYNEGDWPVSGNNVGGHRHH
GGGRGRGCGFRCGHGGSSCWGGTKEGESSASFGGDEGAWHTTGNNVWGRGRHGAGCGGGR
MSGWGGSEEGESGGTFDGNGEDWHASGNNVGGHGHCGGGRDHGPGRGSGRGRGRAGSWDC
DRGGHRGGARNACSFGRGRGRSNERGDNCHRESESGHNSSMVNGGW
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattttattgtggatgatggaatatcatatggagatagatcacctatgaggtgt
ttcaagatgaaccaaaagaagttgaagcaagtggtaaccctttgttcgtctgcattaaat
gatgtgggtcctattattggtgatgtcaatgagatcctgaatcgtcagaaacaagttatg
gctataaatgtcaagctggatgattctagtgagtttgagccgttttttctagctgacaag
tatatgactgagagggataatcatgtaagggagactgacatgccagagaggatgcagatg
atcgaggaaattgttggacctcttccacttgatgaaatgagcagagaagaagagagtgcg
tgggtacttaatcaacttgtaatgaattcagatttgttattttgcacaaaaagaactaca
gaaagatctggagaaggatcttttctactgaacaaaataaagaaggcagatataatgaag
tttttggaattgcatcatgtggagaagtttgatattccatttattgccatgtatcggaag
gagcaatgtcgtagtctactggatgatatagagcaagatgaggctgatagcaaagctaat
aatgatgctggacgagcatgccaattaaagtggcataaggtactttgggtcataaaagaa
ttagacagaaagtggttacttcatcagaagcgtaagagtgctcttcagttgtaccaaagg
agacgctatgatgaggaatgtgtgaatattgattatagtgaaagctatacattgaataag
cagttgttccaatcaatctcaaagtctctcaataaagctgaatcagaggaagagattgat
gacgtagatgcaaagttcagcttgcattttcctccagttgaagagagaatggatggaaaa
tttaagaggcccttaaggaaatcacagtatagtaactgcatgaaggctggcctatggaag
ctagccagccagtttgggtatacctctgagcaactcggtttgcaaattgctttagagaaa
atggatgtggattttcaagagtatcctgaggaatcaccagaggagatagctttaaattat
acatgtactatgttcgaaactccagaacgggtgcttaaaggtgccaggcatatggctgca
ttggaggtcagttgtgacccatgtatcaagaaacacattcgtagtatttttatgaataaa
gctgtaatctcaactaggcctactcttgaaggaaatgcaactatagattgctttcatcaa
ttttcaggagttaagtggctacgtgacaagcctctttctaaattcaatgattctcaatgg
cttcttattcagaaggctgaggaagagaagctcgttcaagtttatataaagttaccagaa
agtacgctgaatgaagtgatcactggctttaatgatgcctacctaattgatggtgctgga
agagctgctcagctttggaaagaacagtgcaagttaattctacatgatgctttattcaac
tttttacttccttctatggagaaggaagctcggaaccttttgacctccagagcaaaacac
atgttgcttatggaatttgggaaggaattatggaagatgatttctgttggtccttatttg
tacaatgaaaattttgttggatcagtggaaagtgttgcaccaaaagtaatgtcatgctgc
tgggggcctggaaatcctgcaacaacatttgtgatgttggattcatcaggagaattgttg
gatgtgttggaagccagatccttcaacctacggtcgcaaaccattgatgcccagcagcgc
aagaaaaatgatcagcaaaatgtccttaagttcatgaagaatcaccagccacatgtcatt
gttattggtgcagcaaatgcatcttgtgtgcgattgaaagatgacgtgaaagagattgtt
tcaaaattggaggaaaatcttagagaccttggccaagctatgaatgggattagtgttgtt
tatggtgatgaatccttgcctcagctttatgaacattcacaggtttcgtcagatcagctt
ccaggacaaccgggcattgtcaagcgagcagttgctcttggacgttacctccaaaatcca
ttggctatggttgccgcactttgtggggttaatagagaaattgtatcttggaagcttagc
tctttagagcactttttaacacctgatgagaagtatgagatgattgaacaggtgatggtt
gatgttacaaatcaggtgggtgttgacataaatttcgctgtgagccatgactggtatttt
cctttgcttcagtttgtttctggacttggaccccaaaaggctgccttgttacaaagggaa
attgttggatatagagcagttaataataggaaagagttagctagttttggacttaagaca
aagaaggttttccataatgctgttggtttcttgtgcgtccgtggcagtcatctgccatgt
actagctttgatattgatctgttggatggtacaagaattcaccctgagtcatatgagctt
gcagagagattggctaaggctgtgtgtgatgatattacagaagcacccatagagtatgtt
aagaaggaacctcagctgctgagttcatttaatattaatgattattgagctacttatgaa
atagaggaaggtgaaaatagaagagataccttttatcatattaagaaggaattgctccat
ggatttctagaccctcgtgagccttataaagtaccatcccttgatgaagaattcaatatg
atatgtggcaaaaatgggactgcacttgctgaaggaagccttgttctagccatagtccgg
catgttgaatcacaacgagctttttgtgtgctggattctggcttgactgggataataatg
aaggatgacttttcagatgaggatggtgattttgctttggaagacaagctgcatgagggt
gataaagtgtcctgcaaggttaaacaaattgacaagagtacattccaggcttttctgact
tgtaaagagagtgaactgaagaggagcagatatgaagatattcttgaagttgatccttac
tatcatgaaagtgggaacatattattaaatcagcaggagaaagcttgtatggatgagaag
cttgctaagaagcatttcaagccaagaacaattagtcatcccttctttagaaacatgaca
ttggatcaagcaatggagtttctatcagataaggatgctggtgaaagtattttccgtcca
agttcaagaggcccatcttatttgactttaactctaaaagtctttgatgaactttacgtt
aacaaagacattgttgaaagtgggaaggatcacaaggacatgacgagcttgcttcatctt
gggaaagtattaaagatagggaatgataagtttcgtgatttagatgaggttagggaccgg
tatgttatcccattggtaaagcacttgaaagaaatgctaggtttccgaaaattcaagagg
ggtgcaaagtcagaggttgatgaagtcttgagagcggagaaattggaataccctatgagg
gtagtttattgttttggcatttcttatgagcatccaggcacattcattttgtcatacata
aaaagtagaaaccttcaccatgagtacgttggtttgcttcctaatggattcaagttcagg
aaacaaacatttgagaagattgagcacctcgtgggattgtttcagaaaaatattgatcgc
ttacagcacacgtcactgacattgggaaatctagcatttgggaattcttcaggagcatgt
acaattggtggtttgcaaggccagttgaattgtagcaaagacagatccatttcaagagga
aggagtttttatcatggagatggaaatgatgatggagggaaaatgcatccaagtgaattg
cctaggccgcacaatggctcaggccatcactcttccaatgatggctttaacagctttgga
aacgaagataaagatcctagtcaaggtgctgctgcaaaatggggctcatgttctgagaat
caggacaggagaaatgagaaatggggcaggacaaataacaaattgggcaacgatattcat
tttgcccccaacaatgaagattggcctggtggatggagcgatggtgttggtgccagtggt
agaaactgggatagtggtgatagaaggggcagtggtggaaactgggatagaaatgatggc
accagaaacagtggatggagcaagggtattggggttgataggactggggaaaaatggggt
caacgtggtggtagaggatctcggggtggttgtaccagtggctggggcagcaccaaaaat
ggtgatagcagtggcagtgatgaagtttggcgtgctagtggaaacaatgtgcatgtacgt
gggcgtgctcataccagtggttggggcgccaccaaagagagtgaaagtggtggcaacttt
gggtacaatgaaggagattggcctgttagtggaaacaatgtgggtggacataggcatcat
ggtggtggacgtggccgtggctgtggctttagatgtgggcatggtggtagtagctgttgg
ggtggcaccaaagagggtgaaagtagtgccagctttggtggcgacgagggagcttggcat
accactggaaacaatgtgtggggacgtgggcgtcatggtgctggatgtggaggtggtcgt
atgagtggttggggcggcagcgaagagggtgaaagtggtggcacctttgatggcaatggg
gaagattggcatgctagtggaaacaatgtgggtggacatgggcattgtggtggtggacgt
gatcatggccctgggcgtggaagtgggcgtgggcgtggtagggctggcagttgggactgc
gacaggggaggccacagaggaggtgccagaaatgcatgtagctttggtcgtggacgaggc
cgtagtaatgagaggggtgataactgccacagggaaagtgaatctggtcacaattcctct
atggttaatggtggctggtga
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