KEGG   Theobroma cacao (cacao): 18587290
Entry
18587290          CDS       T02994                                 
Name
(RefSeq) flowering time control protein FY
  KO
K15542  polyadenylation factor subunit 2
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    18587290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcc03019]
    18587290
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     18587290
SSDB
Motif
Pfam: Beta-prop_WDR3_1st WD40 Beta-prop_WDR5 Beta-prop_THOC3 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I WDR55 Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_WDR75_1st WD40_RFWD3 NBCH_WD40 Beta-prop_Vps41 Tricorn_2nd Beta-prop_HPS5 WD40_like Beta-prop_RIG_1st WD_LRWD1 Beta-prop_DCAF12 WDR54
Other DBs
NCBI-GeneID: 18587290
NCBI-ProteinID: XP_007011064
UniProt: A0AB32UML8
LinkDB
Position
10:complement(19741211..19750612)
AA seq 722 aa
MMYGDPQQQQNQPPPSQGGEFPRGPPPPPPQMMRQPSASSTTLNSEYHHPAPPQIPPYDA
HGDNFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAIDVLPTAAY
IDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ
AHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKFNKSAHKESVRDLSFCRTDLKF
CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGR
ELCSFHGHKNTVLCVKWNQNGNWVLTAAKDQIIKLYDIRAMKELESFRGHRKDVTALAWH
PFHEEYFVSGSFDGSIFHWLVGHETPQVEIPNAHDNSVWDIAWHPIGYLLCSGSNDHTTK
FWCRNRPGDTARDKFSMGQNQGYGEQNPALAGRMPGNFAAPEGPTTPGPYAAGLTRNEGT
IPGVGVPMPLSVPTLDGSAQGDQKQPLPGSMPFGAPPLPPGPHPSLLVANQQQGYQQNPQ
QMQQQQMPPMQMAPPNMSQLQPPSHMPLLPHPHLQRPPPQMPPIGMPSPVPSSMPGSLPP
PSSMPTSHQMPMPGPMGMQGTMNQMPPPMPQGHFMGMNPMHSGSLPNSGAPTVGGFPNGM
QNMQGPANAGGGQMYPQGGAFNRAQGGQMPMMPGFNPYQSGGQSGLPPPPPPGPPPHGQT
PQ
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgatgtacggtgatccacaacagcagcagaaccagccgccgccgtcccaaggtggggag
ttcccaagaggtcctcccccgccgcccccgcaaatgatgcggcagccctcagcttcttcc
actactctgaactcggagtatcaccaccctgctcctcctcagattccgccttatgacgct
catggtgacaactttgctgcaaaaagaatgagaaagctgacccaaaggagagctgttgat
tatacaagcactgttgtgcgatatatgcagattcgcatgtggcaacgagattcacgggac
aggacagtattgcagcctactccagcagcagcaattgatgtgttgcccacagctgcctat
atagataatccatccaccagctttgctgccaaatttgttcatacatctctaaacaaaaat
cggtgttcaataaatcgtgttttgtggactcccacgggcagacgtctcatcacaggttct
cagagtggggaatttactctatggaatggacagtcatttaattttgaaatgattcttcag
gcccatgatcaagctatcaggtctatggtatggagtcacaatgacaactggatggtttct
ggtgatgatgggggtgcaataaagtattggcagaataacatgaataatgttaagttcaat
aaatctgctcacaaagaatcagttcgtgacttaagtttctgtaggacagatttaaagttt
tgttcctgttctgatgacactactgtaaaagtgtgggactttgcccggtgccaggaggag
cgttctttaactggccatggttgggatgtgaaaagtgttgattggcaccctacaaaatcc
ttactggtttcaggtggaaaagacaacctcgtgaaactttgggatgctaagacagggaga
gagctttgctcatttcatggccacaaaaacacagtactttgtgtcaaatggaaccaaaat
ggtaattgggtgttgactgctgcaaaggatcaaatcatcaagctttatgacatcagggct
atgaaggagcttgaatctttccgaggccaccgaaaggatgtgactgcattggcttggcac
ccattccatgaagaatactttgtcagtgggagttttgatggatccattttccattggctt
gttgggcatgaaactccccaggttgaaattcccaatgcccatgataatagcgtgtgggat
attgcctggcatcctattggatatcttctatgcagtggtagcaatgatcacacgacaaag
ttttggtgcagaaataggcctggagatactgctcgtgataaatttagcatgggtcagaac
caaggctatggtgagcaaaaccctgcactagctggtcgtatgcctggtaattttgcagca
cctgaaggtccaacaactccgggaccatatgctgctggattgactcgaaatgagggaaca
attcccggtgttggagttccgatgccattatcagttccaactcttgatggatctgctcag
ggggaccaaaagcagcctcttccaggttccatgccttttggagctccacctcttcctccc
ggtccacatccatctcttcttgttgccaatcagcagcagggatatcaacaaaatcctcaa
cagatgcaacaacagcaaatgcctcctatgcaaatggcacctccaaatatgtcacagcta
cagcctccatctcatatgcccctgcttccacatcctcatttacaacgccctccaccgcaa
atgcctccaattggtatgccttcacctgtcccatcctcaatgccaggatctttgcctcca
ccttcatcaatgccaacatcacatcaaatgccaatgcccggtccaatgggtatgcaaggt
acaatgaatcagatgcctcctccaatgccacaaggccattttatgggcatgaatccaatg
cactcaggatccctgccgaacagtggtgcccctacagttggaggttttccaaatggtatg
caaaatatgcaaggaccagcaaatgcgggtggaggccaaatgtatccacagggtggtgca
ttcaatcgtgcacagggtggacagatgccaatgatgccagggttcaatccttaccagtct
ggtggtcagtctggtctgccgcctccaccaccaccaggtcccccacctcatggtcaaaca
ccgcagtag

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