KEGG   Theobroma cacao (cacao): 18587707
Entry
18587707          CDS       T02994                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    18587707
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcc03021]
    18587707
Enzymes [BR:tcc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     18587707
Transcription machinery [BR:tcc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     18587707
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 DUF2002
Other DBs
NCBI-GeneID: 18587707
NCBI-ProteinID: XP_007011717
UniProt: A0AB32UN80
LinkDB
Position
9:complement(796833..802948)
AA seq 1184 aa
MGASADAKANRADIDLDVDDDVCDEVLSVQQLGEEFLRGFCKQAAVSFFKEYGLISHQLN
SYNAFIKYGLQNTFDSFGEFLIHSGYDPSKKGEGDWRHARVRFGKVTVERPTFWAVSGGN
ELNMLPRHARLQNMTYSSRMKVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDII
IGRIPVMVRSDLCWMNEVEKADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWT
IAYRSEVKRNRLIIRLVENSKVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVN
LIDYESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLST
YLFPTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIA
HARRRMAKTLQRDLYADRNVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVA
NLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAT
TGLVSTNIMESIVDKLFDSGMEELVNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRR
KRRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRTKAFKGENYTFQALLEG
GIIELVGTEEEEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDH
ARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQK
GVLPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEIQ
DKRRKSEDIVNFGKIQSKIGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKH
TERGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTT
QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTISVDAITEQLHRAG
FSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRK
RYGGIKFGEMERDCLIAHGASANLHERLVTLSDSSQMHVCRNCKNVANVIERAVPGGRKI
RGPYCRGCQSVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC
NT seq 3555 nt   +upstreamnt  +downstreamnt
atgggggcgtcagcagatgctaaagcaaatagagctgatatcgatttagatgtagatgat
gatgtctgtgatgaggttctcagtgtgcaacagctgggagaagagtttttgaggggtttc
tgtaaacaagcggccgtgtctttcttcaaagagtatggcctcatcagtcatcagctcaac
tcttacaatgctttcatcaaatatggtctgcagaacacctttgattcttttggagagttc
cttattcattctgggtatgacccgtcgaagaaaggagaaggtgactggcgtcatgctaga
gtgaggtttgggaaggtcactgttgagcggccaaccttttgggctgtttctggaggcaat
gagctcaacatgcttcctaggcatgcacgccttcagaacatgacgtattcctccaggatg
aaggttaatgttgaccttcaggtatacacggcaaaaagtgttaagagtgacaagtttaaa
actggaagagaagagtttgttgaggaggaggttgtgtatcaagataacagggatattata
attgggaggatccctgtgatggtgaggtctgacctatgctggatgaatgaagttgaaaaa
gctgattgtgattttgatcatggaggctattttctgatcaagggtacagaaaagatattc
attgcacaagagcaaatttctatgaagagactctggatttcaaatagccagggttggaca
attgcttacaggtcggaggtgaagagaaacagattaattattagactagtggagaattct
aaagttgaatatatcaaggggggagagaaagtcctcactgtttatttcttgtcaacggag
atccctgtatgggttttgttttttgcccttggtgtatcatcagacaaagaagttgtaaat
ctgattgattatgaaagcaatgattctagtataacaaacatactgtttgcctcaattcgt
aatgctgatgggaaatgttataaattttgtcaaggaagaaatgctattgattatgtaggc
aagttagtcaaagataccagatttccacctgaagaaggtattgaagagtgccttagcaca
tatctgtttcccactctgcgtagtttcaagcaaaaagctcgcttcctagggtacatggta
aagtgtctcttgcaggcctacactggtcgcctaaaatgtgataatagagatgattttagg
aacaagaggctagagttagcaggtgagctgcttgagcgtgaactgaaagttcacattgcc
catgccaggaggcgtatggctaagactctgcagagagatctttatgcagatcgtaatgtt
cgtcctattgagcactatcttgatgcgtctatagttacaaatggactttcaagagcattt
tctactggagcctggtctcatccttataaaaggatggaaaggatttcaggagttgtggca
aatcttggacgagcaaatccattgcagacaatggttgatttgaggaaaacacgtcaacag
gttcagtacactgggaaggttggagatgcaagatacccacacccttctcactggggaaaa
gtttgcttcctctccactccagatggtgaaaattgtgggcttgtaaaaaatctggccacc
acaggacttgtgagtacaaacataatggaatccatagttgacaagttgtttgattccgga
atggaggaactggttaatgatacttgtagctcacttgatgggaaagataaagtcttttta
aatggggaatgggttggggtttgtgaagattccctttcgtttgctgctgaggttagaaga
aagcgacgcagtaaagaatttccgcatcaggtggaaatcaaaagagatgaacataaagga
gaagtgcgcatcttttctgatggtggaaggattctgcgtcctcttttagttgttgacaac
ttaaacagaacaaaagcatttaagggggaaaattacaccttccaggctcttttagaagga
gggataattgagcttgttggaactgaagaagaagaggactgtcgaactgcatggagtatt
aagtatcttttaacagatgttgaggggaagcagcctgttaagtatactcattgtgagctt
gacatgtcatttcttttgggtttaagctgtgggatcattccatttgcaaatcatgatcat
gcaaggagagtcctctatcaggcacagaagcattctcaacaggccattgggttttctaca
acaaaccccaacattagagttgatactttgtcacaccaattatattacccccaaaggcca
ctgtttcgtacaatgacatctgattgtcttggaaaactgggacatcctctgggtcagaag
ggagtgctaccgaagccagaattatacaatggccagaatgctattgtggcggtcaatgtt
catcttggatacaaccaagaggattccttggtaatgaaccgagcctctttagagcgtgga
atgttccgttctgaacacgtaagaagttacaaagcagaagttgataacaaggaaattcag
gataagaggcggaagtctgaagatattgtaaattttggaaaaatacaaagtaagattgga
cgtgtggacagccttgatgatgatggttttccttatgttggtgctaacctgcagtgtggt
gacattgtcattgggaggtgtgcagagtcaggagctgatcatagtataaaactgaagcac
actgaaagaggcatggttcagaaagttgtgttatcttccaatgatgatgggaaaaattat
gctgtggtatctctgagacaggttcgttctccctgtcttggagacaaattttcaagcatg
catgggcaaaagggtgttcttggttttctggagtctcaagagaattttcctttcacaact
caaggaatagttcctgatattgtaattaacccacatgcattcccttcacgacaaactcca
ggtcaactcttggaggctgctttgggaaaggggattgcctgtggtgggtcaatgaaatat
gccacccctttctccactatttctgtagatgccatcacagaacagcttcacagggctgga
ttttcaagatggggaaatgagagagtttacaatggtcgaactggtgagatggttcgttca
ctcatatttatgggtccaacattctaccagcgtctgatccacatggctgaagacaaagtg
aaatttcgtaacactggacctgtacacccgcttacaaggcagccagttgctgaccggaaa
cgttatggtgggatcaaatttggtgagatggagcgtgactgtctcattgctcacggtgca
tcagccaacttgcacgagcgtctcgtcacactcagtgattcctcccagatgcatgtttgc
cgcaactgtaaaaatgttgcaaatgtgattgaacgggcagtaccaggtggtcgaaagatc
aggggtccctactgccggggttgccagtcggtggatgacattgtcagggtaaatgttcct
tatggtgccaagttattgtgccaggagctatttagtatgggtattaatctgaaatttgaa
acccagctttgttga

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