Theobroma cacao (cacao): 18587715
Help
Entry
18587715 CDS
T02994
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18587715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18587715
03036 Chromosome and associated proteins [BR:
tcc03036
]
18587715
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
18587715
Coactivators
SAGA/TFTC/STAGA complex
18587715
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
18587715
STAGA complex
18587715
TFTC complex
18587715
SAGA complex
18587715
SLIK complex
18587715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
WD40_like
WD_LRWD1
DUF5659
PALB2_WD40
LisH
Cytochrom_D1
Beta-prop_VPS8
MHC_II_alpha
Motif
Other DBs
NCBI-GeneID:
18587715
NCBI-ProteinID:
XP_017983201
UniProt:
A0AB32WZY1
LinkDB
All DBs
Position
9:complement(862913..868290)
Genome browser
AA seq
668 aa
AA seq
DB search
MDNMQAVNSFVAAYLKKKGFKEAEQLLEDLQSKDSAPIDFHNDPELAKFIHHFSQSEDDV
VRYQDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHSFMDLVAKGHLQEARTFFNAFREDH
ELMHSRDLQKLEGVLTQSHLEEMEFARSLRQNKVNIKICQYSYDLLLQYLHKTQSTAMLG
VINEHINFQVSPGQPTSISDDAEVVTLIGSCQDAANQINQKEIHWGLLEDSLEERLEKAG
GLLSDSEKTEGENKEGDVDETKKRSVEGGKQGASTKKLKKDKAASATAKSARPEANTTST
APRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLNCSSISHDG
SLVAGGFSDSSLKIWDMAKLGQQAGSSILQGENDSTSSKHVVGPNGVKRSYTLLQGHSGP
VYSANFSPLGDFILSSSADTTIRLWSTELNANLVCYKGHNYPVWDVQFSPVGHYFASASH
DRTARIWSMDKIQPMRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIF
IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHSSCVWTLAFSCEGSL
LASGSADCTVKLWDVTTSTKVPKNEEKSGNPNRLRSLKTLPTKLTPVYSLRFSRRNLLFA
AGALSKNQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggataatatgcaggcagtgaatagcttcgtggcagcttatctgaagaagaaaggattc
aaggaagcggagcaattgttggaggatcttcagagcaaggattccgctcccatcgatttc
cacaacgaccccgaactcgctaagttcattcaccacttctcccaatcggaggatgatgtg
gtacgctaccaggatggatatagcaaactgaggtcttggacttatagttcactagattta
tataagcatgagttgcttcgtgtgctttatcctgtctttatacattcattcatggatctg
gtggcaaaaggacatctgcaagaggctagaacattttttaatgcctttcgtgaagaccat
gaactgatgcactcacgtgaccttcaaaagctggaaggagttctcactcagtctcatttg
gaggagatggaatttgctcgttctcttaggcagaataaagttaacatcaagatatgtcag
tattcctacgaccttctgctgcagtatttgcataaaacacagtccactgctatgcttggg
gttattaatgaacacatcaacttccaagtttctcctggacagcccacttcaatttctgat
gatgcagaggttgtaacacttattggaagctgccaggatgcagctaatcagataaatcag
aaagaaatacattgggggttgcttgaagactccttagaagaacgcttggagaaagcagga
ggtttgctttcagattctgaaaagacagaaggggagaacaaagagggggatgtagatgag
actaagaaaagatcagttgaaggtggaaagcaaggtgcttcaactaaaaagttgaaaaag
gacaaagctgctagtgcaacagcaaaaagtgctcgccctgaggctaacaccacctccact
gcaccccgagtaaaaccagagctccctttgccagtaatgccaacagaggtagaacagtca
attcttgaggacttaagaaaccgtgtacagttgagtagtgttgcattgccatctgtcagc
ttttacacttttctcaacacacataacggtttgaactgttcatcaatttcgcatgatggg
tctttggttgctggtggattctcagactcgtcattgaagatttgggatatggcaaagcta
ggccagcaagctggcagttctattttgcagggtgaaaatgattctacttcaagtaaacat
gttgtgggaccaaatggtgtgaaaagatcctatacattgttgcagggtcactcaggacca
gtttattcagccaactttagtcctcttggggattttattctttcctcttctgcagataca
acaattcgcctgtggagcacagaactaaatgcaaatcttgtttgctacaagggtcataat
tatcctgtatgggatgttcagtttagtcctgtaggacactattttgccagtgcttcgcat
gatcgaacagcaaggatttggtcgatggataaaatacaacctatgaggataatggcaggg
cacttgtctgatgtcgattgtgtgcaatggcatgccaactgcaactatattgccactggc
tctagtgacaaaacagttagattgtgggatgtgcaaagtggagaatgtgttcggattttc
attggtcataggagtatgattttgtcattagcaatgtcacctgacggtcgatatatggca
tctggtgatgaagatggcacaatcatgatgtgggacctgtctagtggacgctgcgttaca
cctttgatgggtcacagctcgtgtgtgtggacgcttgctttcagttgtgaaggttcactt
ctggcatctggatctgctgattgcactgtaaaattgtgggatgtaacaacaagcacaaag
gtcccaaagaatgaagaaaagagtggaaatccaaacagactaagatcgttgaaaaccttg
ccaaccaagcttactccagtttatagtttgcggttttccagaaggaatctgctgtttgca
gctggggcgctctctaagaaccagtaa
DBGET
integrated database retrieval system
