Theobroma cacao (cacao): 18587867
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Entry
18587867 CDS
T02994
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18587867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18587867
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18587867
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18587867
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
18587867
NCBI-ProteinID:
XP_007011965
UniProt:
A0AB32UNL1
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All DBs
Position
9:1672756..1674662
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AA seq
274 aa
AA seq
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MSILPKSESIHIREVWEENLGSEIELIKNIVDEYPYIAMDTEFPGIVLRPIGNFKSSFEY
NYQTLKANVDLLKLIQLGLTFSDDKGNLPTCGTDKFCVWQFNFREFDPNEDVYANDSIEL
LSQSGIDFKKNKEKGVSAHRFSELLMSSGVVLNDSVHWVTFHSGYDFGYLLKLLTCKNLP
ETQAEFFSLIDIYFPTLYDIKHLMKFCNSLHGGLNKLAELLDVERIGICHQAGSDSLLTS
CTFMKLKENFFSGSTEKYAGVLYGLGVENGQNTH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattttgccaaagagtgaatcgattcacattagggaagtttgggaggagaatcta
ggaagtgaaatcgagttaattaaaaatattgtggacgagtacccttacatcgctatggac
actgagttcccgggtattgttctacgcccaataggcaatttcaagagtagttttgaatac
aattaccaaactttgaaagcaaatgttgatcttttgaaattgattcagttgggccttact
ttctctgatgacaaagggaatttacctacttgtggaactgataaattctgtgtttggcaa
ttcaatttccgtgaattcgatcccaatgaggatgtttatgctaatgattccattgagctt
ttatctcaaagtggcattgattttaagaagaacaaggaaaagggtgttagtgctcatcgg
tttagtgaactgttaatgtcatctggggttgttttgaatgatagtgtgcattgggtgact
tttcatagtggttatgatttcgggtatttgcttaagttgcttacttgcaagaatcttccc
gagacacaagcagagttctttagtttgatcgatatctatttccctactctttatgatatc
aagcatctgatgaagttttgcaacagccttcacggcgggttgaacaagcttgcagagctg
ttagatgtggagaggattggtatctgtcaccaagctggttcggatagtttgcttactagt
tgtacatttatgaaattgaaagaaaatttctttagtgggtcgactgagaaatatgctggt
gttttgtatggtcttggtgttgagaatggacagaatacacattag
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