Theobroma cacao (cacao): 18587901
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Entry
18587901 CDS
T02994
Name
(RefSeq) dicer-like protein 4
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcc03036
]
18587901
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
18587901
microRNA pathway
RISC loading complex
18587901
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
DND1_DSRM
dsrm
Cas3-like_C_2
PAZ
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
18587901
NCBI-ProteinID:
XP_007012011
UniProt:
A0AB32UNI3
LinkDB
All DBs
Position
9:complement(1819046..1832145)
Genome browser
AA seq
1654 aa
AA seq
DB search
MPDGELSADGVEPPVTAKPKAYASPSPIAEVSEENGAKVEKKEKDPRKIARKYQLELCKK
AMEENIIVYLETGCGKTHIAVLLIYELAHLIRKPQQKICIFLAPTVALVQQQGRVIEDSL
DFKVGTYCGNCRHLKNHQDWEKEMEQYEVLVMTPQILLRSLYHCFIRMDLIALLIFDECH
HAQIKSNHPYAEIMRAFYDKATASTLPRIFGMTASPIVGKDASSQMNLPKSINSLENLLD
AKVYSIGDKEELESFVASPVVRVYNYGPVDLGPSSSYMLCCSKLEKMKRQCISTLGRKNG
DSQCARSTKKLLRRMHDNIIFCLENLGLWGALQACRLLLTGDNSERNELVEDEGSLSDDS
VCDRYLAQAADIFASDCRRDGTAHDISDVEILKEPFFSKKLLRLIGILSTFRLQPNMKCI
IFVNRIVTARSLSYILQNLKFLSSLKCHFLVGVHSGLKSMSRKTMKKILEKFRTGELNLL
VATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPLSEYAFLVNSGNERELNLIK
NFKNDEDRMNMEISFRTSTEVFTSLEERMYKVDSSGASISSGYSISLLHQYCSKLPHDEY
FDPRPSFFYFDDIGGTICNIVLPSNAPINQIASTPQSSVDAAKKDACLKAVEELHKLGAL
NDYLLPLQKNAFEEETVLESSDSGSSEDEDSRGELHEMLVPAALKEPWTNLEDYVLLNSY
YIKFIPDPEDRSYKEFGLFVKSPLPKEAERMELDLHLARRRSVMTKLVPSGVAEFNRKEI
MQAQHFQEMFFKVILDRSKFLSEYVPLGNNEVFASSSSTFYLLLPVILHNCENKVMVDWK
IIKRCLSSPLFKTPAEAVENGNFPSGVCLELANGCRDVRDVKNSFVYAPHKVAFYFITNI
VGEKNGYSPYRDSGTLSHVEHLKMSDIHLKHPEQPLLRAKPLFKLRNLLHNRKPEDSESN
ELDEYFIDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLENLLVAIELKHVFSASFPEGA
EVTANKVLEALTTEKCQERFSLERLESLGDAFLKFAVGRHLFLLHDALDEGGLTRRRSNA
VNNSNLFKLATRSNLQVYIRDQPFDPCQFYALGHPCQIICTKETEGTTHSQYNCQADHAN
SEVRCSRNHHWLHKKTIADVVEALVGAFIVDRGFKAATAFLRWIGIRVDFQHSQVNNVCA
ASKRFMPLCSKVDTGALENLLGYQFLHKGLLLQAFVHPSHNKHGGGCYQRLEFLGDAVLD
YLITSYLFSVYPKLKPGQLTDLRSVSVNNKSFANVAVDRSLHKFLICDSCPLSEAIGKYV
DFITSSPERGLFEGPKCPKVLGDLVESSFGAILLDTGFNLNRVWKIMLSILDPIKSLSTV
QLNPIRELQELCQSCNWDLKFLTSKSGRNFSVDAKVKAGDVPLAVSAINPNRKDAIRTAS
QQIYAKLKALGYAPKSKSLEEVLKTSRKMEAELIGFDETPVDVADPDTNGSAKMKLQQSV
ENDFNPRIHFINKAINLCKPRNSPVSSPMPSFEVKAGCMPSPIEVKGALPCSSNVDPACG
IDTPSRGESLQKTARSRLHEICAINCWKPPLFECCEEEGPSHLRSFTFKVMLVIEEAPDM
ILECFGSPRTKKKAAAEHAAEGALWYLKHEGYLH
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgccggacggcgagttgtccgccgacggagtcgaaccgcccgttaccgctaaacctaaa
gcctatgctagcccctcgccgatcgctgaagttagtgaagaaaatggagcgaaagtggaa
aagaaagagaaggacccgagaaagatagctagaaagtaccaattggagttgtgcaagaaa
gccatggaagagaacataattgtatatttggagactggttgtgggaagacccatattgct
gtgctgcttatttacgagcttgctcatttgataaggaaaccccagcaaaagatttgcatt
tttcttgcccccacggtggctcttgttcagcagcaaggcagggttatagaagattctctt
gatttcaaggttgggacttattgtgggaactgcaggcacttgaagaatcaccaggactgg
gaaaaagagatggaacaatatgaggtgctggttatgacccctcaaatactacttcgtagc
ttgtatcactgcttcatcaggatggatttaattgcccttctgatatttgatgagtgtcat
catgctcaaattaaaagcaatcatccttatgcagaaatcatgagagctttctatgataaa
gctactgcatcaacgcttcctcgtatatttggcatgacagcatctcccattgttggtaaa
gatgcttctagtcaaatgaatttaccgaaaagcatcaacagtctcgaaaatttacttgat
gctaaggtctattcaattggagataaggaggaattggaaagcttcgtagcatctcctgtc
gttagagtatataattatggtcctgttgatttgggcccttctagttcctacatgctttgt
tgtagtaaactcgagaagatgaagcgccagtgcatatcaacacttggccggaagaatggc
gattctcaatgtgccaggagcacaaaaaagctactcagaagaatgcatgataatataatc
ttttgtttggaaaatcttggcctttggggagcattacaagcttgccgacttcttttgact
ggtgataactctgagaggaacgaattggtagaagatgagggaagtttaagcgatgactct
gtgtgtgatcgatatcttgctcaggctgctgatatttttgcttctgattgtaggagagat
gggactgcacatgatatatctgatgtagagattttgaaggaaccatttttctcgaaaaag
cttttacgccttattggaattctttccaccttcaggttacagccaaatatgaaatgtata
atatttgtgaataggattgttaccgctagatccttgtcatacatactgcaaaaccttaag
ttcctatcatctttgaagtgccattttcttgtgggagtccactctggtcttaaaagtatg
tcacggaagacaatgaagaaaattcttgagaagttcagaactggagagttgaatcttttg
gtcgcaactaaagtgggtgaagaaggacttgacattcagacatgctgccttgtgatacgg
tttgaccttccagaaactgttgcaagttttatccaatcgaggggccgtgcaagaatgcct
ctgtctgagtatgcatttctggtgaacagtgggaatgagagggaactaaatttgattaaa
aattttaagaacgatgaagatcgtatgaatatggaaatttctttcagaacgtctactgag
gtatttaccagtcttgaggaaagaatgtataaagttgattcatctggtgcttccatcagt
tcaggatatagcatctctctacttcatcagtactgctcaaaactaccccatgatgagtac
tttgaccccaggccaagctttttttattttgatgatataggaggaacaatctgcaatata
gttttaccttccaatgctccgataaatcaaattgccagtacacctcaatcttcagtggat
gctgctaaaaaagatgcttgtctaaaagcagttgaagaattgcataaattgggagccttg
aatgactatctcttgccattgcaaaagaatgcttttgaggaggagacagtgctggagtct
tctgattctgggagctctgaagatgaggattcacgtggcgaactacatgagatgcttgtt
cctgctgcacttaaagaaccatggacaaacttggaagattatgttctcctaaattcttac
tatataaaatttattccggatcctgaggataggagctataaggagtttggtctctttgtc
aagtctcctctccccaaagaggctgagagaatggagctggatcttcacctagctcgccgt
agatctgtgatgaccaagcttgtcccatcaggggttgcagaattcaacagaaaagagatc
atgcaagcacagcattttcaagaaatgttcttcaaggtcatccttgatagatcaaaattc
ctttctgaatatgttcccttaggaaacaatgaagtttttgcatcaagctcctcaacattc
tatctgttgctccctgttattttgcacaattgtgagaataaagtcatggtggactggaag
attattaaaagatgtttgtcatctccactttttaagactccagcagaagctgtagagaat
ggaaatttcccttcaggtgtttgcttggaacttgcaaatggttgtagggatgtaagagat
gttaagaatagctttgtatatgctccacacaaggtggcattttactttatcactaacatt
gttggtgaaaaaaatggttacagcccatacagagattcaggcactttaagccatgtggag
cacttaaaaatgtctgacattcatcttaagcatcctgaacaacctcttttgcgtgcaaag
ccactttttaaattgcggaatttgctacacaatcgaaagccggaggactcagaatcaaat
gaattggatgagtacttcattgatttgcctcctgagctttgtcagttgaaaataataggc
ttctccaaagatattgggagttcactttctttgttaccatcaattatgcaccgcctggag
aacttgcttgtggcgattgaactgaagcatgttttttctgcttcattccctgagggagct
gaagttacagccaataaggtcctagaagcactcactacagagaagtgccaagagcgtttt
tctcttgaaaggcttgaatcacttggtgatgctttcctcaagtttgctgtaggccgccat
ctttttcttttacatgatgctcttgatgaagggggactgactaggagaaggtctaatgct
gtaaataattctaatttgttcaagctagcaacaaggagcaatttacaggtttacatacgc
gatcaaccttttgatccttgccaattctatgctttgggccatccctgccaaataatttgt
actaaagaaactgagggaactactcattcacaatataattgtcaagcagatcatgcaaat
agtgaagtcagatgcagtagaaatcaccactggctacataagaaaacaattgctgatgtg
gttgaggctcttgttggagcatttatagttgatagaggcttcaaagctgcaactgcattt
cttagatggattggcatacgagtggacttccaacactctcaagttaataatgtttgtgct
gcaagcaagaggttcatgccgctctgctctaaagtggatactggagctcttgaaaatttg
ttgggatatcagtttcttcacaagggtctactccttcaggcatttgtgcatccttctcac
aataagcatgggggaggctgctaccagagattggagtttcttggagatgctgtcttggat
tatttaatcacatcatatctgttttcagtctatccaaagttgaagcctggccagttgact
gatttgagatcagtgtcagtaaacaacaagtcctttgccaatgttgcagtagatagatcc
ttacacaaatttcttatctgtgattcttgtcccctctccgaggccataggaaaatatgtt
gacttcattacatcatcaccagaaaggggattgtttgaagggccaaaatgtccaaaggtt
cttggtgacttggtagagtcttcgtttggtgctattctccttgatacagggttcaacttg
aaccgtgtttggaagataatgctatccattttggatccaatcaagagcctttcaacggtg
cagcttaatcctattagggaattacaggaactttgccagtcttgcaactgggatctgaag
tttctaacatctaaaagtggcagaaatttttcagttgatgcaaaagtaaaggcaggagat
gttcctctagctgtttctgctatcaaccctaacagaaaagatgctatcagaactgcttcg
cagcaaatatatgcgaagttaaaggctctaggttatgcacccaagtcaaagtccttggag
gaagttttaaaaacaagccgtaagatggaagccgagctgattggatttgatgaaacacca
gttgatgttgctgatcctgacactaatggatcagcaaaaatgaaattgcaacaatctgtt
gagaatgatttcaaccccagaatccattttatcaataaggcaatcaatctctgtaaaccc
cgcaactctcctgttagcagccctatgccgtcttttgaagtcaaagcaggatgcatgcca
tcacctattgaagtcaaaggagcactcccctgttcctccaatgttgatcctgcttgtggg
attgacacgccatccagaggtgaatcacttcaaaaaactgctagatcacgattacatgaa
atctgcgcaatcaattgttggaaaccccctttgtttgaatgttgtgaagaggaaggacca
agccatttgagatcattcactttcaaggtgatgcttgtaatagaagaagccccagatatg
atcctggagtgctttggcagtcccaggaccaaaaagaaagctgcagcagagcatgcagca
gaaggtgcactctggtacttgaagcatgaaggttacttgcattag
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