Theobroma cacao (cacao): 18588173
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Entry
18588173 CDS
T02994
Name
(RefSeq) endoribonuclease Dicer homolog 3
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcc03036
]
18588173
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
18588173
microRNA pathway
RISC loading complex
18588173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
DND1_DSRM
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-GeneID:
18588173
NCBI-ProteinID:
XP_007012461
UniProt:
A0AB32UP14
LinkDB
All DBs
Position
9:3283985..3295584
Genome browser
AA seq
1664 aa
AA seq
DB search
MHSPKEEQGNPLKSSFSEINSDPPDMMVLDNNDPAKEDPSSPSNPKDLNPRGYQLEVYEV
AKKRNIIAVLDTGGGKTMIAVMLINDFGQAIRSFDNKKLIIFLAPTVHLVNQQFEYIKLH
TNLEVEQYYGAKGVDEWNAGCWKKEIKEHDVLVMTPQILLDALRKAFLSLEVVSLMIIDE
CHRATGNHPYTKIMKEFYHKSNNKPKIFGMTASPVISKGVSSSSDCEAQISELESVLDCL
IYTIQDRTEMEAYVPSAKESCRFYDPTQFSSLDLKAMAEAYRLKIDASLSKLQGSPQTSF
KDMDDKLKTLRKRLSNDYAKILHCLDNLGLICAYEAVKVCLENIPDAKEECETYKEIILQ
CKNFLEEVLRIIGESLPLGDENFLNSGFDYFKAVNLGYISPKLHELLQVFQSFGETREIL
CLIFVERIVTAKVIERFVKKVTYLSHFTVSYLTGSNTSVDSLAPKMQKETLDSFRSGKVN
LLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARLSNSQFIMMLERGNVQQRNQ
LYDIIRSEYSVTTTAINRDPDLCLLKNPTVKETNVYIVDATGASVTADSAVSLLQRYCEK
LPGDKYYVPKPSFKLTFSGGLYECKLLLPVNAALQTIVGPLSRNSHLAKQLVCLEACKQL
HQMGALDDHLLPTIEEPSQNHCVPKGKDSGSGAGTTKRKELHGTTCIHALSGSWGEKPDA
AVFFAYKFNFSCNIISVVYSGFVLLIESKLADDVGNIELDLYLIRKMVKTCVSSCGQVHL
DADQMMKAKRFQEFFFNGLFGRLFVGSKSSGTPREFLLQNKTSSLWSPSNMYLLLPLEDS
LSNELRINWPAVTACTFAVEFLNKNSLLGTEQSDGDGGNQSLNRTGSSVTECKGTNIIHF
ANRSVDVNNLRNMVVVAIHTGRIYSILELVSNTSADSSFNEIVDSVPSEFATFSEYFHKK
YGIVLKHPGQPLLLLKQSHNPHNLLVNFNDEGVSAKASQAGLVNGKPRNHVHMPPELLLV
LDVPIDVLKAFYLLPSLMHRLESLMLASQLREEINFHSSNFDIPSSLILEALTTLRCCES
FSMERLELLGDSVLKYAVSCHLFLRYPKNHEGQLSAKRSWAVCNSTLHKLGTDRRLQGYI
RDSAFDPRRWVAPGQLSLRPVPCKCGVDSLEVPLDKKFQTEDPKVKVGKSCDRGHRWMCS
KTISDCVEALIGAYYISGGLIAALHMMKWLGIDAEVDPALVVEAIRCASVRTYVPTDEIH
IIELKMGYNFSSKFFLQEALTHASVGEFYCYQRLEFLGDSVLDLLITQYLYHNHTDIDPG
ELTDLRSASVNNESFAQVAVRHDLHKHLQHCSTLLSNQISEYVQSFPESHDTIRSGPGIK
GPKALGDLVESIVGAILIDTNLNLNEVWRIVEPLLSPIVTPDKLELPPLRELNELCDSLG
YFIKEKCIYNGEIVHAKLQLQLDDILLIGEGFDRIRKVAKGKAASYLLKELENRGISRKR
RKQGCADSTQTTDDDSLEPTNHKRQRRAKIQLLEDSTTVPSPTHDSSKRACSTTPPTPVI
ATINTKKGGPRTALFELCKKLLWPMPTFTATEHKSSTLMEIGEGTERKKGFISFVSNITL
NIPRFGTIECTGDARADKKSSLDSAALVMLYELEQQGKLIIGES
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgcattctccaaaggaggagcagggcaaccctctgaagagcagcttcagtgagataaac
tcagacccacctgatatgatggttttagacaataatgatcctgctaaggaagacccttct
tcaccttcaaatccgaaggacttgaaccccagagggtatcaattggaggtgtatgaagtt
gcaaagaagagaaacataatagcagtgttggataccggcggagggaagacaatgatagct
gtgatgctcattaacgattttggtcaagctatcaggtcctttgacaataaaaagttgatt
atttttttggctcccactgttcatctagttaatcagcaatttgaatatataaaacttcat
acaaatctggaagttgaacagtattatggagctaagggagttgacgaatggaacgcgggt
tgttggaagaaagaaataaaggagcatgatgttcttgttatgacaccccagattctattg
gatgccttgaggaaggcattcttgagtctagaggtggtgtccttaatgataatagatgag
tgccaccgtgctactggcaaccatccttatacaaaaataatgaaggaattttatcacaaa
tctaataacaagccaaagatatttggaatgacagcatcacctgtcattagcaaaggtgtt
tcatccagcagtgattgtgaggctcaaatatcagaacttgaaagtgttttggattgcttg
atatatactattcaagacaggacagagatggaagcatatgttccttctgcaaaagaaagt
tgtaggttctatgatccaacacaattctctagtttggatttgaaagcaatggcagaagcc
tatcggttaaagatagatgcttcattgtcaaagttacaaggctcaccacaaacttctttt
aaagacatggatgataagttgaagacactacgaaagcgattatcaaatgactatgctaag
attctgcattgccttgacaatcttggtctaatatgtgcttatgaggctgttaaagtctgt
ctggagaatatccctgacgccaaagaggagtgtgaaacatataaagaaatcatcttgcag
tgtaaaaatttccttgaggaagtgctacgtataattggggagtctcttccccttggtgat
gaaaattttctgaattctgggtttgactatttcaaggcagtcaatcttggctatatatct
ccaaaactgcatgaactacttcaagttttccaatcatttggagaaactagagaaatattg
tgcctcatttttgttgaaagaattgttactgctaaagtaattgaaagatttgtgaagaaa
gtaacctatttgtcacatttcacggtttcatatttgactggaagtaacacatcagttgat
tccctggcaccaaaaatgcaaaaggaaaccttggattcatttcgatctgggaaggtgaat
ctattatttgctactgatgtggttgaggagggaattcatgttccaaactgctcctgtgtg
atacgttttgacctgcccaagacagtccggagttatgtacaatctcgaggaagagctagg
ctgagtaattcccaattcatcatgatgcttgagaggggaaatgtccaacaaagaaatcaa
ctatatgatataatcaggagtgaatattcagtgacaactacagctattaatagagaccct
gatctatgccttctcaaaaatcctacagtcaaagaaactaatgtttatattgtggatgct
actggagcttcagttactgcagattctgctgttagcctcctgcaacgatattgtgaaaag
ctccctggtgataagtattacgtgccaaagccgagtttcaagttaacattttctggaggg
ttatacgagtgtaaattattattacctgttaatgcagccttgcaaacaattgttggtcct
ctatctaggaattctcatttagcaaagcagcttgtatgcttggaagcatgtaagcagctt
catcaaatgggcgcattggatgatcatcttcttccaaccattgaagagccttcacaaaat
cattgtgttcctaaaggaaaagattcaggttcaggtgcaggaactacaaaacggaaggaa
ctgcatggaacaacttgcattcatgcattatctggaagctggggagaaaaacctgatgct
gctgttttctttgcctataaatttaacttctcctgcaatatcattagcgtggtttattct
ggatttgttcttctaattgaatccaagcttgctgatgatgtggggaatattgaattggat
ctctacttgattcgaaagatggttaagacttgtgtctcttcatgcgggcaagtgcatttg
gatgcggaccagatgatgaaagcaaagcgctttcaggaatttttctttaatggcttgttt
gggaggttatttgttggatctaaatcatctggaacaccaagagaatttctacttcagaat
aaaacaagctctttgtggagtccctccaacatgtatttgcttctaccccttgaggacagt
ttaagcaatgaattgagaataaattggccagcagtaacagcttgtacatttgctgtagaa
tttttaaataaaaattctttgttaggcactgagcaatccgatggtgatggaggcaatcaa
tcattgaaccggactggttcatctgtgacagaatgcaaggggaccaatataatccacttt
gctaaccgttcagttgatgttaacaatcttaggaatatggtagtagtagctattcatact
ggaagaatctactccatccttgaattagtgagcaatacatctgctgacagttctttcaat
gaaattgttgattctgtcccatcagagtttgctaccttctctgaatacttccataaaaag
tatgggatcgtgcttaaacatccaggacagcctttgttgctgttaaagcagagtcataac
ccgcacaacttgcttgtgaatttcaatgatgaaggtgtttcagctaaggcatcgcaagct
ggtttggttaatgggaagccacggaatcatgtccacatgccccctgagcttttacttgtc
cttgatgttccaatagatgttcttaaagcattttacttgctaccatcattgatgcaccgg
ctggagtccttaatgttggctagccaacttagagaagagatcaactttcattctagcaac
ttcgatataccaagctcattgatcctggaagcactaacaacacttagatgttgtgaaagt
ttttccatggagaggctggaattgcttggggattcagttctaaagtatgctgtgagctgc
cacctctttcttagatatcccaaaaaccatgaaggacaattatctgccaagcgatcatgg
gcagtttgtaattcaaccctgcataagttgggaactgaccgcagattacagggatacatt
agagacagtgcttttgatccccgtcgttgggtagctccagggcaactatctcttcgccct
gttccttgtaagtgtggggtggactctctagaagttcctttagataaaaaatttcagact
gaagacccaaaagttaaggttggtaaatcctgtgatagaggccatcgatggatgtgttct
aaaaccatatcggattgtgttgaagctctcataggagcatactacattagtggtggactc
attgctgcccttcatatgatgaagtggcttggtattgatgctgaagttgatcccgctttg
gtagttgaagctattagatgtgcatcagtacgaacttatgtccccactgatgaaatccac
attatagagttaaaaatgggctacaatttttcttctaagtttttcttacaggaggccttg
acacatgcatctgtgggtgagttctactgttaccagaggcttgaatttcttggtgattct
gtgttggacttgctgatcacccaatatctctaccacaatcacactgatatagatccagga
gaattgaccgacctgcgctcagcttcggttaataatgaaagttttgctcaagttgctgtg
cgtcatgaccttcataagcatcttcaacattgttcaactttattatcaaaccaaataagt
gagtatgtacagtccttccctgaatctcatgacaccatcagatcaggtccaggcataaaa
ggtcccaaggctcttggagacctggttgaaagtattgttggggcaattttgatcgatacc
aatctcaatctcaatgaagtctggagaattgttgaaccactgttatccccaattgtgact
cctgataagcttgagctgcctccacttagggaactgaatgaactatgtgactctcttgga
tattttattaaggaaaaatgtatatataatggggaaattgtgcatgccaagcttcaatta
cagctagatgatattttgttgattggagaggggtttgatcgaatcagaaaagtagcaaaa
ggaaaagcggcttcatatttgttgaaggaacttgagaacaggggaatctcccgcaagaga
aggaaacagggctgtgcagattcaactcaaaccactgatgatgattcattagagccaaca
aaccataagaggcagaggagagccaaaattcaattgcttgaagattcaactacagttcct
tccccaactcatgattcttcaaagagagcatgcagtactacacctcccaccccagtaatt
gcaacaataaacacaaagaaaggaggacctaggactgctctttttgagctttgtaagaaa
ctgctatggcctatgcctacattcacagcaactgaacacaaatcaagtactcttatggaa
attggtgaaggtactgaaaggaaaaagggctttatcagctttgtatcaaatatcaccttg
aatataccgagattcggcactattgaatgcactggagatgcaagggctgacaaaaaaagt
tcattggattctgcagcactggttatgctttatgagcttgaacagcaggggaagctcatc
attggtgaatcctaa
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