Theobroma cacao (cacao): 18588256
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Entry
18588256 CDS
T02994
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18588256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18588256
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18588256
mRNA degradation factors
5'-3' decay
Lsm complex
18588256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
18588256
NCBI-ProteinID:
XP_007012604
UniProt:
A0A061GLG0
A0AB32UPE5
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Position
9:complement(3858456..3861573)
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AA seq
128 aa
AA seq
DB search
MSWAGPDDIFLSTSLATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEKEELPSHMTPVSAAEIKRAQKAEREATDLKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctggccctgatgatatctttctctccacttctcttgccacctatcttgac
aaaaagcttcttgtcttgctgagagatggcaggaaacttttgggattactgcgttctttt
gaccaatttgctaatgttgttctagaaggagcttgtgagcgcgttattgttggtgatctg
tactgtgacatccccttaggtctatatgtaatccgtggggagaatgttgtcttaatagga
gagctggacttggaaaaggaggagcttccctcacatatgactcctgtatcggcagccgag
ataaaaagggctcagaaagcagaaagagaagctacagatctgaagggctccatgagaaaa
agaatggagttccttgattttgattaa
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