Theobroma cacao (cacao): 18588315
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Entry
18588315 CDS
T02994
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03030
DNA replication
tcc03420
Nucleotide excision repair
tcc03430
Mismatch repair
tcc03440
Homologous recombination
tcc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18588315
03420 Nucleotide excision repair
18588315
03430 Mismatch repair
18588315
03440 Homologous recombination
18588315
03460 Fanconi anemia pathway
18588315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tcc03000
]
18588315
03032 DNA replication proteins [BR:
tcc03032
]
18588315
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18588315
Transcription factors [BR:
tcc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
18588315
DNA replication proteins [BR:
tcc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
18588315
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
18588315
MMR (mismatch excision repair)
18588315
DSBR (double strand breaks repair)
HR (homologous recombination)
18588315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep-A_N
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
18588315
NCBI-ProteinID:
XP_017983008
UniProt:
A0AB32WY53
LinkDB
All DBs
Position
9:4182543..4187071
Genome browser
AA seq
747 aa
AA seq
DB search
MPVNLTRNAIASINTGDVNSKPLVQVVDIKLIGNSQERYRFLLSDSESSQHAMLATQLNE
QVRTGRVKKGSIIQLIDYVCSTVQNRRIIVVLNMETIIPEYEIIGNPKLLTDSDSTTNKS
LPNLTRNAIASINAGDVNSKPLVQVVDIKLIGNSQERYRFLLSDSESSQHAMLATQLNEQ
VRTGRVKKGSIIQLIDYVCSTVQNRRIIVVLNMETIIPEYEIIGNSKLLTDSDSTTNKSL
PNSNSQPSVRSSNYKYRANVPTNNVQSFRPTIQPPYQPPPNYKIQGPIMKNEAPARIIPI
AALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY
DVIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLESNSTVELCPNEDGSIPRQQFSFRPI
SEIDSAENNSILDVIGIVITVNPSVPILRKNGMETQRRILNLKDASGKSVELTLWGDFCN
KEGQKLQEMVDSGFFPVLAVKAGKVSDFNGKSIGTISSTQLFINPDCPEAQGLRDWFEKG
GRNTASISISKENLPGGSKNEIRKTLSQIRDEGLGRSDKPDWVTARATVVFIKTDNFCYT
ACPLMIGDRQCNKKVARSGNKRWLCDRCNQEFEECEYRYLLQVQIQDHTGLTWVTAFQES
GEEILGCSAKELYSLKYELQDDTRFGEIICSRLFNQYVFKLKIKEELYGDEQRVKITVVK
AEKVNYSAESRYLLDLISKNLQIRKKF
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcaatctcacgcgcaacgcgattgcgtcgatcaacactggcgatgtgaactcg
aagccgttggttcaggtggtggatatcaagctgattggcaattctcaggagagataccgg
tttctactatccgattccgagtcctctcagcacgcgatgctcgccactcagctcaatgaa
caagtcaggaccggacgagtcaagaaaggatctatcatccagttgatcgactatgtttgc
agcactgttcagaatcgtaggattattgtcgtgctgaatatggagactataattccagag
tatgaaataattgggaatccaaaacttcttacggattctgattcaacaactaacaagtca
ttgcctaatctcacgcgcaacgcgattgcgtcgatcaacgctggcgatgtgaactccaag
ccgttggttcaggtggtggatatcaagctgattggcaattctcaggagagataccggttt
ctactatccgattccgagtcctctcagcacgcgatgctcgccactcagctcaatgaacaa
gtcaggaccggacgagtcaagaaaggatctatcatccagttgatcgactacgtttgcagc
actgttcagaatcgtaggattattgtcgtgctaaatatggagactataattccagagtat
gaaataattgggaattcaaaacttcttacggattctgattcaacaactaacaagtcattg
cctaatagcaattcgcagccttcagtgaggtctagcaattataaatatagagccaatgtt
cccactaacaatgtccagagctttcgtcccactattcaacccccctaccagccacctcca
aattacaaaattcagggcccaataatgaagaatgaggcaccagcacggattattcctatt
gctgctttgaatccttaccagggtcgttgggcaatcaaggctcgtgtgactgcaaaaggg
gatctgcgtcgctacaacaatgctaggggagatgggaaggtcttctcctttgacctcctt
gactctgatggaggagaaatacgggtgacctgcttcaatgctgttgttgaccgcttctac
gatgttattgaagttggtagagtctacttaatttcaaagggtagcttgaaacctgcacaa
aagaattttaaccatctgaagaatgagtgggagatattcttggaatcaaattcaactgtg
gagctttgccctaatgaagatggctctattccaagacaacagttctccttcagacctatc
agtgaaattgatagtgctgaaaacaattctatacttgatgttattggtatcgtgataact
gttaacccttcagttcctattttgaggaagaacggtatggaaactcagagaagaattctg
aatttgaaggatgcatctggaaagagtgttgagctaaccctttggggtgatttctgcaac
aaggaaggtcaaaagctgcaagagatggttgattctgggtttttcccagttttggctgtt
aaagctggcaaggtcagtgacttcaatggaaaatccattggcactatttcttccacgcag
ctctttataaatccagattgtccagaggctcagggccttagagactggtttgaaaaaggg
gggaggaatactgcttctatctctatttctaaagaaaatttgcctggaggatccaagaat
gagatacgtaaaaccttgtctcagatcagggatgaagggcttggaagatctgataagcca
gattgggtcacagcaagggcgactgtagttttcattaaaacagataatttctgttacaca
gcttgcccattgatgattggagatagacaatgcaataagaaagtggcacggtcgggtaac
aagagatggctgtgtgaccgttgtaatcaagaatttgaggaatgtgagtacagatacctt
ctccaggttcagattcaagaccatacaggactgacatgggtaacagctttccaggaatct
ggggaagaaatcttgggatgctcagcgaaggaattgtactcattgaaatatgaattgcag
gatgataccagatttggtgaaattatttgcagcagactctttaaccaatatgtattcaag
cttaaaatcaaagaggaactctatggcgatgaacagagggtgaaaatcactgtagttaag
gctgaaaaggtgaactactctgcagaaagtagataccttctagacttgatttcgaagaat
ttgcaaattagaaaaaaattttga
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integrated database retrieval system
