Theobroma cacao (cacao): 18588626
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Entry
18588626 CDS
T02994
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
18588626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18588626
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
18588626
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
18588626
NCBI-ProteinID:
XP_007013217
UniProt:
A0AB32UQ28
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All DBs
Position
9:5950298..5959598
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AA seq
1076 aa
AA seq
DB search
MQRQKSILSFLQKPSPASQDGIGGKVKGQEASQFPSKQQNQNAAAVCGSSLEVTGTDTPP
EKVPRKVLPASFAANTGTRDSSSMFSSIMHKFVRVDDKENASQSNRARTNSSNIEELPKV
ELTAQPTEMAKVLSIETDDDLGPETPVTRPGVSRLKRIQGDLPKFGDKKDSSLLDSGKRV
RFLQDSNVGNKNHKDVADIASKFDWLDPSRIKDSNRRRPGDSLYDKKTLYIPPDALKKMS
ASQKQYWSVKCQYMDVVLFFKVGKFYELYEIDAEIGHKELDWKMTVSGVGKCRQVGISES
GIDDAVQKLVARGYKVGRMEQLETSEQAKARGANSVISRKLVQVITPSTIVDGNIGPDAV
HLLAIKEGNYGVEKGSTVYGFAFVDCAALKFWVGSISDDSTCAALGALLMQVSPKEVVYE
SAGLPREAHKALKKYSFTGSTAVQLSPALSVTDFLDASEVRNMIQSNGYFKGSLNSYINA
LDGVMHPDVALCALGGLVSHLSRLMLDDILRSGEVLPYQVYQGCLRIDGQTLVNLEIFNN
SADGGSSGTLYKYLDYCVTSSGKRLLRSWICHPLKDVDSINNRLDVVEELMSHSEKMLLI
AQYLRKLPDLERLIGRVKASIQSSASLVLPMIGKKLLKQLVKAFGTLVKGLRIGMDLLKL
LQKDADMVSLLSKVFKLPMLSGTNGLDEFLGQFEAAIDSDFPNYQNHDLTDTDAETLSIL
IELFIEKAAQWSQVIHALNCIDVLRSFAVTASLSFGAMARPLVLPQSKTVTLNQETGGPI
LEIKGLWHPFALGENGGLPVPNDIFVGEDVNAYHPRALLLTGPNMGGKSTLLRATCLAVI
LAQLGSYVPCETCVLSLVDIIFTRLGATDRIMTGESTFLVECTETASVLQNATQDSLVLL
DELGRGTSTFDGYAIAYAVFRHLVEKVHCRLLFATHYHPLTKEFASHPHVTLQHMACSFK
LKSESCSKGEQELVFLYRLTNGPCPESYGLQVAIMAGIPEHVVDAASGAAQVMKRSVGES
FRASEQRSEFSTLHEEWLKTLVNVSQVGNRNLDEGDAYDTLFCLWHELKNAYRAFS
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccaaaaatcgatactctcgttcttgcaaaaaccttcaccggcgagccaagac
ggcatcggcggaaaggtaaaaggccaagaagcttctcagtttccttcaaagcaacagaac
caaaatgcggccgccgtttgtggctcgtctttggaagtcacaggcaccgatactccacca
gagaaggtgccacgtaaggtcttgcctgcgagctttgcggccaataccgggaccagagat
tcttcttctatgttttctagtatcatgcacaagtttgtgagggttgacgacaaagaaaat
gcaagtcagagtaaccgggcacgtaccaactcttctaatatagaagaattgcctaaagtg
gaattaactgctcaaccaactgaaatggccaaagttttaagtattgagactgatgatgat
ctcgggccagaaacacctgttactcggcctggtgtttctcgtctgaagcgaattcaaggt
gacttacctaagtttggggataagaaggatagttctttgttggattctggtaaaagagta
aggtttctccaggactctaatgttgggaacaagaatcataaggatgtcgctgatattgct
agcaaatttgattggcttgatccttctcgcatcaaggattctaatagaagaaggcctggt
gattccctttatgacaagaagactctttatatacctccggatgctctcaagaaaatgtca
gcgtctcaaaaacaatattggagtgtcaaatgccaatatatggatgttgttctcttcttt
aaagtggggaaattctatgagctctatgaaatagatgctgaaattggccacaaggagctt
gattggaaaatgacagtaagcggagttggcaaatgccgccaggttggtatatcagaaagt
ggaattgatgatgctgttcaaaagctggttgctcgtggatacaaagtgggacgtatggag
cagttagagacatctgagcaagcaaaagctaggggtgcaaattctgtaatttcaagaaaa
ttagttcaagtaatcaccccatcaacaatagttgatggtaacattgggcctgatgctgtt
catctacttgctataaaggagggaaactatggagtggagaaaggttcaactgtctatggg
tttgcttttgttgattgtgctgctttaaaattttgggttggttccatcagcgatgatagt
acttgtgctgctctgggagctctattgatgcaagtgtctcctaaggaagtcgtatatgaa
agtgcagggctgcccagagaagcccataaagcactcaaaaagtactcatttactggatct
acagcagttcaactgagtcctgcactttcagtcactgattttttggatgcctctgaagtt
agaaatatgattcagtcaaatgggtactttaaagggtcacttaattcatatattaatgct
cttgatggtgtaatgcaccctgatgttgcattgtgtgcacttggtggattagtcagtcat
ctatcacgattgatgctggatgacattttaaggagtggagaggttttaccctaccaagtt
taccaaggttgcctcagaattgatggacagacacttgtaaatcttgagattttcaataat
agtgccgatggtggttcttcaggtacattgtacaagtatcttgattactgtgtgacctca
tctggtaagcggcttttgaggagctggatttgccatcctctgaaagatgttgacagcatt
aacaacaggctagatgtggttgaagaattaatgtcacattcagaaaaaatgttactcatt
gctcaatatcttcgcaaacttccagacttagaaaggctaattggacgtgttaaggctagc
attcaatcatcagcttctcttgttcttcccatgataggcaaaaaattattgaaacaactg
gtgaaagcttttgggactcttgtcaaaggtctcaggattggaatggatttgttaaaacta
ttacaaaaggatgcagatatggtatctctattatcaaaagtttttaagcttccaatgcta
agtggcactaatgggcttgatgaattccttggtcaatttgaagcagccatagatagtgac
ttcccaaattaccagaaccatgatttaacagatacggatgctgaaacgctttctatactg
attgaattatttattgaaaaagccgctcaatggtctcaagtcattcatgccctaaactgc
attgatgtactaagatcttttgcagtaactgcaagtctttcatttggggctatggcaagg
cctcttgtgttgccacaatcaaaaactgtaactttgaaccaagaaacaggaggaccaata
cttgaaattaaagggctttggcatccgtttgcccttggggagaatgggggactgcctgtc
ccaaatgacattttcgtgggtgaggatgtaaatgcctatcatccccgtgctttgctattg
actggaccaaatatgggtggaaaatcgactctcttacgagctacttgtctggctgttata
ctggcccagctgggcagttatgtaccctgcgagacatgtgttctctctcttgtggacata
atctttacgaggcttggtgctactgatcgaatcatgactggcgagagtaccttcctcgtg
gagtgcacggaaacagcatcagttcttcaaaatgctacccaagattctctcgttcttctt
gatgaactgggtcgaggaacaagcacttttgatggatatgctattgcatatgcagtgttc
cgccatcttgttgaaaaggttcactgtcggctattatttgcaacacactaccatcccctc
actaaggagtttgcatctcatccacacgttactctgcaacacatggcctgctcctttaaa
ttgaagtctgaaagctgttctaaaggtgagcaggagctggttttcctatatcggcttacc
aatggaccatgcccagagagctatggtttgcaagttgcaatcatggctgggattccggaa
catgtagtggacgctgcctcaggggctgcacaagtaatgaaaagatccgttggagaaagt
tttagggcaagtgaacagagatcagaattctcaaccctccatgaagagtggttgaagacc
ctagtaaatgtctcgcaggttggtaatcgtaacttggatgagggtgatgcttatgatacc
ttgttttgcttgtggcatgaactaaaaaatgcatatagagctttcagctaa
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