Theobroma cacao (cacao): 18588737
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Entry
18588737 CDS
T02994
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18588737
03041 Spliceosome [BR:
tcc03041
]
18588737
03036 Chromosome and associated proteins [BR:
tcc03036
]
18588737
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18588737
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
18588737
mRNA cycle factors
Common to processing body (P body) and stress granule
18588737
Spliceosome [BR:
tcc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
18588737
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
18588737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18588737
NCBI-ProteinID:
XP_007013410
UniProt:
A0AB32UQ48
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All DBs
Position
9:6707841..6711625
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AA seq
628 aa
AA seq
DB search
MTRNDMFTESTRKQTRPSRPRYLPPHLRHQNANAVFTDADTPELTRPRYNRFSLPQTARN
SGGRGRGRGPSFTNRQKPNLDDEKFDELEVIDDTAEGTNETNFGAYEDIPVQASGENIPP
PVQTFAEIDLGHVLKQNIKRCKFLKPTPIQRHAIPIVIAGRDLMACAQTGSGKTAAFCFP
IICGVLKDRLLLSIPGGSQVACPLALILAPTRELSCQTHEEAKKFAYRTGVKIVVAYGGT
PISQQFRNIEKGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKI
VEKMDMPPPGTRQTMLFSATFPDEIQKLASDFLSDYVFLAVGRVGSSTDLIVQRVEIVQD
MDKRNHLLNLLHAQKYNGSRSKHPLTLVFVETKRGADELEHWLSRNGFPAIAIHGGKVQM
ERELALRSFKSGATPILVATDVASRGLDIPHVAHVINFDLPKNIDDYVHRIGRTGRAGNC
GLATAFFSDKNLPLAKSLAELMRESNQEVPSWLNQYAENSSFSGGGWAKRVGGKFGGYDF
RKGFPSGNENNYHSSTYNYTHPVSATGDYYAAASANAQTFLGSAGIYADPCTTSANADYL
VGRNENLDGAGPREYAYSHGQVVASGWE
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgactcggaatgatatgtttacagagtcaaccaggaaacaaactcgcccaagcaggcct
cgctacctccctcctcacttgagacaccaaaacgcgaatgctgtctttactgatgctgac
acccctgagttaactcgcccacgttacaaccgtttcagcttgcctcaaaccgctcggaac
tctggaggtcgaggccgcggccgtggaccctcgttcaccaaccgccaaaaaccaaacttg
gacgatgaaaagttcgatgaactagaggtcattgatgacaccgcagaaggaacaaacgaa
accaacttcggcgcctacgaggacattcctgtacaagcaagcggcgagaacataccgccg
ccggtgcagacctttgccgagatcgatttggggcatgttttgaagcaaaacataaagagg
tgcaagttcctgaagccaactccaatccaacggcatgctattcctatagtgattgcgggt
cgggatttgatggcttgtgcacaaactgggtcagggaaaacggctgcgttttgttttcct
ataatttgtggggttttgaaggatcggttgttgctgagtattcctggtggaagccaggtg
gcgtgtcctcttgctcttattttggctcctaccagagagttgtcttgtcagacccatgag
gaggcaaagaagtttgcttataggactggggttaaaatcgttgttgcatatggagggacg
cctatttctcagcagtttcgtaacatagaaaaaggtgttgacatcttagtagcaactcct
gggcggttggtggatatgattgagagagccagagtttctcttaggatgataaaatatcta
gccttagatgaggcagaccgaatgttggatatgggctttgagcctcagattcgaaagatt
gttgagaaaatggacatgcctcctcctgggacaaggcagacaatgcttttcagtgctaca
tttcctgatgaaatacagaaacttgcttctgatttcctctcagactatgtatttctggct
gttggaagggttggttcaagcacagatttgattgtacagagagttgaaatagttcaggat
atggacaaaagaaaccaccttttgaatcttcttcatgctcaaaagtacaatggaagccgt
agtaagcatcctttaactcttgtttttgtggagacaaagagaggcgcagatgaattggaa
cactggttgtcaaggaatggttttccagcaattgcaatacatggtggcaaagtgcagatg
gaaagagagctagctctgagatccttcaaaagtggtgccactccaattttagttgctacg
gatgtcgcttcacgaggacttgatatccctcatgttgcacatgtcattaactttgacttg
ccaaaaaacatagatgactatgtgcacaggatagggcgaacaggccgtgctgggaattgt
ggcctggctacagcattcttcagtgacaagaacctgcctcttgcaaagtcactggctgaa
ttaatgagggaatcaaaccaggaagtgccatcttggctaaaccaatatgcagagaattcc
tcctttagcggtggaggttgggctaaacgtgttggaggcaagtttggtggttatgacttc
cgaaagggctttccatctgggaatgagaacaattaccactcgagcacttacaattatact
caccctgtttctgccactggtgattattatgctgctgctagtgctaacgcccaaactttt
cttggcagtgctggcatctatgctgatccttgtaccacatctgctaatgccgattatttg
gttggaaggaatgaaaatcttgatggtgctgggccacgtgaatatgcatatagtcatggg
caggttgttgccagtggatgggaatag
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