Theobroma cacao (cacao): 18589305
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Entry
18589305 CDS
T02994
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18589305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18589305
03041 Spliceosome [BR:
tcc03041
]
18589305
03032 DNA replication proteins [BR:
tcc03032
]
18589305
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
18589305
Spliceosome [BR:
tcc03041
]
Complex A
U1 snRNP components
Sm proteins
18589305
U2 snRNP components
18589305
Complex B
U1 snRNP components
18589305
U4/U6.U5 tri-snRNP components
18589305
Complex C
U2 snRNP components
18589305
DNA replication proteins [BR:
tcc03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
18589305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
18589305
NCBI-ProteinID:
XP_007014270
UniProt:
A0A061GXN6
A0AB32UR46
LinkDB
All DBs
Position
9:13384374..13389717
Genome browser
AA seq
88 aa
AA seq
DB search
MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFTGNL
GEILIRCNNVLYLRGVPEDEDIEDADRD
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggctacaattcccgttaacccgaaacctttcttgaacaatttgactggaaagactgtt
atagtgaagctcaagtggggaatggaatacaaaggttttctcgcctcagttgattcttac
atgaacttgcagcttggcaatgctgaagagtatgtcgatgggcaattcactggaaatctg
ggggagattttgatcagatgtaataatgttctctatcttcgtggggtaccagaagatgaa
gatatagaagatgctgatagggactag
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