KEGG   Theobroma cacao (cacao): 18589470
Entry
18589470          CDS       T02994                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03020  RNA polymerase
tcc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    18589470
  09124 Replication and repair
   03420 Nucleotide excision repair
    18589470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcc03021]
    18589470
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18589470
Transcription machinery [BR:tcc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     18589470
  RNA polymerase III system
   RNA polymerase III
     18589470
  RNA polymerase I system
   RNA polymerase I
     18589470
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      18589470
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat
Other DBs
NCBI-GeneID: 18589470
NCBI-ProteinID: XP_007014514
UniProt: A0AB32UQX2
LinkDB
Position
9:17749855..17756152
AA seq 208 aa
MSVSDEQITKLFKARRTVLQMLRDRGYSVDDSDIKTTRQQFIEKFGDNIHLKRDDLLIHC
NKGDAPIDQIYVFFPAELKVGVPMVRNCAKRMKADNVFNAILVVQKALTAPAKAAINEIN
SYFHLDVFEEAELLTNITEHMFVPKHTVLTDQEKKKLLEKYRVKETQLPRILVSDPVARY
YGMKHGQVVKITRESVTADTYDTYRYAV
NT seq 627 nt   +upstreamnt  +downstreamnt
atgtcggtgtctgacgaacaaatcacaaagctattcaaagctcgtagaacagttttgcag
atgctgagggataggggatattctgttgatgattcggatattaaaacgacaagacaacaa
ttcattgagaaatttggtgacaatatccacctcaaaagggatgatcttttgatccattgc
aacaaaggagatgctccaattgatcagatttatgtcttctttcctgcagaactaaaggtt
ggtgttcctatggtaagaaactgtgcaaagcgtatgaaagcagataatgtctttaatgca
attttggtcgttcaaaaagctttgacagcccctgctaaagcagcgataaatgaaattaat
tcatattttcatttggatgttttcgaggaggcggagttgttgaccaatatcacagaacat
atgttcgtccccaagcatacagtactgacagatcaagaaaagaagaaattactggaaaaa
tacagggtaaaggaaacacagctacctcgtattctggttagtgatccagttgctagatat
tatggtatgaagcacggacaagttgtcaagattactcgagaaagtgtgactgctgataca
tatgacacataccgatatgctgtatga

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