Theobroma cacao (cacao): 18589630
Help
Entry
18589630 CDS
T02994
Name
(RefSeq) leucine-rich repeat extensin-like protein 5
KO
K13095
splicing factor 1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18589630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18589630
Spliceosome [BR:
tcc03041
]
Complex A
Other components
Complex A specific factors
18589630
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
KH_1
SF1-HH
Motif
Other DBs
NCBI-GeneID:
18589630
NCBI-ProteinID:
XP_007014743
UniProt:
A0AB32URG6
LinkDB
All DBs
Position
9:24971823..24986283
Genome browser
AA seq
871 aa
AA seq
DB search
MSTKVDHTSAVETRIVNMSATTTSSTASTTGPKVSMFAAKTGFVIPKNKLSGSLVPIFRG
GKKPGVNDTATEDNLNQVQRKTKWGPDLTQDAAVIKGRALAYQTRVDQIMQQLKSGNLDV
GDHEDSPFAAQNLVKRSSDTQLDSEKLELLEIERREAIGEILKLNPSYKAPADYKPLLKE
AVVPIPVKEYPGYNFAGLIFGPGSDTKKRLEKETGAKIQVHGIKANTRQKVEISSPDGNE
AQDAYEELYVHLSADTFEKVDGAVALIELLVSSISETLGTSLAPTSVSGNNVNVLSQALD
IAVSCATDSALNQEVPQFTQASLQGQFQYHNSWFPAGPTPLNFTAPIFNSPVSAQSSPSN
LPSLFGPQPAPAAGYNSILQNSSFISSSPQLPRQVLSQPYTPQMHPLVHTGPPRNLILSN
PNPASAQPSVLSSLPFSGSQPQALGLLPSTRPSMPLFPQTASTVSSRPLQDQLEVTARSS
TGWSGTSASLGLNNVGQLAPPVALSQLPHTVVSQPVVASSSTAPQNMSVTFATGQSGPQL
TNVPINHPSMSFAPGPPLGSSPAISGPLRPTAASLPMPVPTQMRSSSPVISMAPSPSPSI
NPAMVSRPILAPVPSTSLSLSLPGGISGNMANFTSVNQPANIAPRPLHASSGDFTFQSQQ
AQVPASPMVPRPGSQAANPHALPPRSAVQQQAPTAPSFQFGVPNSTPQPVMHVFPRPQSG
NQMGLTQTHISSSLLSANPNVMSAPPRPPAFPNTGPVATGLRNFVPSPQTPNIAGPFPSR
PGHPLQLQQHYPALPTRPGNFMSPNPGFASGVFLHSNRPASGHSTGHQVYDPFAPTSVPL
VSQQQGGGKAKAGKQESDPEYEDLMASVGVK
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaaaggttgaccatacatctgctgttgaaactcgcattgtcaacatgtctgca
acaactacttcatccacagcatcaaccactggcccaaaggtctcaatgtttgctgcaaag
actggctttgttataccaaaaaataaattgtcaggttcattggttcctatcttccgagga
ggtaaaaaaccaggagtaaatgacactgccactgaagataatttgaaccaggttcagagg
aaaacaaaatggggccctgatctgacacaggatgctgctgtcataaagggaagagcctta
gcttatcagactcgggtggatcagatcatgcagcagctgaaatcaggaaatctggatgtt
ggggatcatgaagactcaccatttgctgctcagaatttggttaaaagatcttctgatact
caacttgatagtgagaagttagaacttttggagattgaaagacgggaagcgattggtgaa
atactaaagttaaatccaagttacaaagcaccagcagattataaacctttattgaaagag
gcagtagttcctatccctgtgaaagaatatcctggatacaattttgctggtctaatattt
ggtcctggaagtgatactaagaaacgactagaaaaggaaactggagctaaaatacaagtg
catggcattaaagcaaatactagacagaaggttgaaatttcttcacctgatggtaatgaa
gcccaggatgcttatgaagagttgtatgttcatctatcagctgatacctttgagaaagtt
gacggagcagttgcattgattgagttgctagttagttcaatatcagaaactttgggaact
agtttggcgcctacttcagtatctgggaataatgtgaatgttcttagtcaagccctggac
atagctgtttcttgtgcgactgatagtgctttaaatcaggaagtgccgcaatttacacaa
gcttctctgcaaggtcagtttcaataccacaattcatggttcccagctggtcctacacca
ctgaattttacagcaccaattttcaacagtcctgtatctgcacagtcctcaccttcaaac
ctgccttcactctttgggcctcaaccagcccccgcagctggatacaactcaattcttcaa
aactcatcctttatttcatccagcccacagctgccaagacaagtattatcacagccatat
acgcctcagatgcatcctttggttcatactggccctcctagaaatcttattctctcgaat
ccaaatcctgcatcagctcaacctagcgttttatcttcactaccattttctggaagccaa
ccccaagctctagggctactccctagcacaagaccatcaatgcctttgtttccccaaact
gcatctactgtttcatcaagaccactacaagaccagctggaggtaactgcaagaagctcc
acaggctggtcaggcacttctgcttccctaggtttgaacaatgttgggcaactggctcca
ccagtagctctttcccagctgcctcatactgttgtttcacaacctgttgtggcatccagt
tccactgcccctcaaaacatgtcagtaacttttgcaacagggcaatctggtcctcaatta
accaatgtacctattaaccatccttccatgtcttttgctcctggtcctccactagggtct
tcccctgcaatatcaggccctttacgtccaacagcagcatctctacctatgcctgtacca
acacaaatgcgatcctcttcgcctgtcatttccatggcaccatcaccaagtccatctata
aatccagcaatggtatctagaccaattctcgcaccagttccatccacatcattatcacta
tctctcccaggaggaatttcaggaaatatggcaaattttacttccgtaaatcaacctgca
aatatagctccaaggccactacatgcaagttctggtgatttcacttttcaatctcaacaa
gcacaggttccagcctcaccaatggtcccaaggccaggaagtcaggcagcaaatccacat
gctctaccccctagatcagcggtacaacagcaagcacctacagcaccatctttccagttt
ggtgtgcccaattctactccccaacctgtgatgcatgtgtttcccagaccacagagtggc
aaccagatgggtttgacgcaaactcatatatcttcttcactgctaagtgctaacccaaat
gtcatgtctgctccacccagacctccagcattcccaaacactggccctgttgcaactgga
ttgagaaactttgttccatctccccaaacacccaatattgctggtccctttccttccagg
ccagggcatcctttgcaacttcaacaacactacccagctctgccaactaggccaggaaat
ttcatgtctccaaacccagggtttgctagcggtgtttttctgcattctaataggcccgca
tctggacattctaccggacaccaagtttatgatccatttgctcccacatcagttcccctc
gtatctcaacagcagggagggggtaaggcaaaagcaggaaaacaggaaagtgatcccgag
tatgaagacttgatggcttcagtaggagtaaagtag
DBGET
integrated database retrieval system
