Theobroma cacao (cacao): 18589981
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Entry
18589981 CDS
T02994
Name
(RefSeq) protein SMG7
KO
K14409
protein SMG7
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18589981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18589981
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
18589981
mRNA cycle factors
Common to processing body (P body) and stress granule
18589981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
18589981
NCBI-ProteinID:
XP_007015277
UniProt:
A0AB32URQ3
LinkDB
All DBs
Position
9:30998264..31004912
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AA seq
989 aa
AA seq
DB search
MMIAQMDKMSAPSSRERAQRLYEKNIELENNRRRSAQARVPSDPNAWQQMRENYEAIILE
DHAFSEQHNIEYALWQLHYKRIEELRAHYSAALASAGSNASQGVKVAPRPDRLTKIRLQF
KTFLSEATGFYHELILKIRAKYGLPLGYFSDDSESRIVMDKDGKKSADIKKGLVSCHRCL
IYLGDLARYKGLYGDGDSKSREYATASSYYLQAASIWPSSGNPHHQLAILASYSGDELVA
VYRYFRSLAVDNPFSTARDNLIVAFEKNRHNCSQLPGDVKTLLVKEPAVRLTGKGRGKVE
AKLASKDANMELSPAKEKVSGVQETYKSFCIRFVRLNGILFTRTSLETFADVLTLVSRDL
CELLSAGPEEGLNFGTDAAENALFLVRLVSILIFTVHNLKRESEGQTYAEIVQRAALLQN
AFTAVFELMGHVVKRCLQLQDVSSSHTLPAILVFLEWMACCPDVAAACKDVDEKQSITRS
HFWKHCISFLNKILSVRPMCIDDDEDETCFFNMSRYEEGETENRLALWEDFELRGFLPLL
PAHTILDFSRKRSFVSDGDKEKKARVKRILAAGKALANVIMVDQETVCFDSKAKKFLIGV
EPSEDVTFTSSTSLATNSVGHETPSEKTISIGIVQPIPQPRMVGEEEDEDEVIVFKPPVV
SEKRTEVIGLNWSPSETLKLNQSNSAGDLKFYSSTMSVPLDSHLQRNTFDASPLLPVSVG
SIFPQHLQPVQMHASRWSVEEATSLANSLKGSTLLENGHLTKPEMQDNVGLSHPAARSVA
IQQPISASSGGMYYSQTKVPETVMPSRIDAIVSSGVTGDSLAAKTTSASQVGMRKNPVSR
PVRHLGPPPGFSPVPPKPLNESVSATETENPLMDDYSWLDGYQLTSSLKGSGLDSSINYA
SHADPQYVNNSSNGLTGTVSFPFPGKQVPTVQFQMEKQKGWQNFHTLEHLKIQHEQKLQQ
QQLMNGNQQFTSLPEQYQGQSVWTGRYFV
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagcgcagatggataaaatgtctgctccttcatccagggagcgcgcacagcgc
ctttatgagaagaatatagagttggaaaataatcgtaggcgatcagctcaggcacgtgtg
ccttcagatcccaatgcctggcagcagatgcgtgagaactatgaggccataattctagag
gaccacgctttttctgagcagcacaacattgaatatgctttgtggcagttacattacaag
cggattgaggaactaagagcacattatagtgctgccctagcttctgcaggatcaaacgca
tctcagggtgtgaaagttgctccaagacctgaccgtcttacaaaaataagactgcagttt
aagactttcctttcagaggcaacgggattttatcatgaactaattttgaaaatcagagca
aagtatggacttccacttgggtacttctctgatgattcagaaagccgaattgttatggac
aaagatgggaagaaatcggctgacataaaaaaaggcttggtgtcttgtcaccgttgtttg
atatacttgggagacctggctcggtacaaaggattatatggagatggagactctaaatca
cgtgagtatgcaacagcttcgagttactacttgcaagctgcatcaatttggccatcaagt
gggaatccacatcatcagttagctatactggcgtcctattcaggggatgagctggtggcc
gtttatcggtattttcggagtttggcagtggataaccccttttcaactgcgagggataac
ttgattgtggcatttgagaagaatcgtcataattgctcacagcttcctggggatgttaaa
actctcttggtcaaggagcctgctgtgcggttaacaggaaagggtagagggaaagtggaa
gcaaaacttgcatctaaagatgccaacatggaattaagccctgctaaggagaaagtgtct
ggtgtccaggagacttataagtccttttgcattagatttgtgcgtctaaatggcattctt
tttacacgcacaagcctggagacttttgcagatgttcttactctggttagccgtgatcta
tgtgaacttctctctgctggaccagaagagggactgaattttggcacagatgctgctgag
aatgcactttttcttgttaggctggtttctattctcatatttacagttcacaatctgaag
agggagagtgaaggtcaaacatatgctgaaattgtacagcgtgctgccctacttcagaat
gcgttcactgccgtttttgaattgatgggacatgtagttaagagatgtttacaactccag
gatgtttcttcaagccacaccttacctgctatcctggtttttctagaatggatggcttgc
tgcccagatgttgcggcagcttgcaaggatgtggacgagaaacagtcaattactagatcg
catttctggaaacattgcatatcttttctgaataagatcttgtcagttaggccaatgtgc
attgatgatgatgaagatgagacctgctttttcaatatgagcaggtatgaagaaggggaa
actgaaaaccgtcttgcattgtgggaggactttgagttgcgaggtttcttgcctcttctt
ccagcacacaccattttggacttctcaaggaaacggtcttttgtaagtgatggtgataag
gaaaagaaagcccgtgtcaagagaattttagcagctgggaaggctctagctaatgtcatt
atggttgatcaggaaactgtttgttttgattcgaaagccaagaaatttcttattggagtt
gagccttcagaagatgtcacattcacctcttctacctcactggcaacgaacagtgtgggg
catgaaaccccatctgagaagactattagtattggtattgtgcagccaattccacaacca
agaatggttggggaagaggaggatgaggatgaagtgattgttttcaagccgcctgttgtg
agtgagaagagaactgaggtgattggtctaaactggtccccctctgagactttgaagctt
aatcaaagtaattctgctggagatctcaaattttatagcagtaccatgtctgttcctctt
gatagtcatctccagcgtaatacatttgatgctagtcctctactgcctgtatctgttggt
agcatattccctcagcatctgcagcctgttcagatgcatgcatctaggtggtcagtggaa
gaagctacttctctggctaatagcttgaaaggttcgacacttttggagaatgggcattta
acaaaacctgagatgcaagataatgtaggcctttctcatcccgctgcacgatcagttgct
atccaacaacccatcagtgctagttctggtggtatgtactatagtcagacaaaagtgcca
gaaaccgttatgccatccagaattgatgctattgtgtcatctggagttactggtgattct
ttggctgctaaaactacctcagcttcacaagttgggatgcggaagaatccagttagccgc
ccagttaggcatcttggtcccccaccaggttttagccctgttcctccaaaaccactgaat
gaatctgtttctgctacagaaacagagaacccactcatggatgattatagttggttggat
ggatatcagttgacatcatcattgaaaggctctgggcttgatagttccatcaattatgca
tctcatgcagatccccagtatgtaaataacagcagcaatggcttgactggaacggtaagc
tttcccttccctggtaagcaggttccgacagtgcagtttcaaatggaaaagcagaaaggc
tggcagaatttccatactcttgagcatctgaaaattcagcatgaacagaagttgcagcaa
cagcaactcatgaatggaaaccagcagtttacctcactgcctgagcagtatcaaggacaa
tcagtctggacaggtcgttattttgtgtga
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