Theobroma cacao (cacao): 18590440
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Entry
18590440 CDS
T02994
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tcc04131
]
18590440
Membrane trafficking [BR:
tcc04131
]
Protein recycling
Others
EARP complex
18590440
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
NYAP_C
Motif
Other DBs
NCBI-GeneID:
18590440
NCBI-ProteinID:
XP_007016027
UniProt:
A0AB32USR8
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Position
9:34984892..35000509
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AA seq
1104 aa
AA seq
DB search
MQQPNLFPFGSVFGNPFLLNGDAGGDGGDLNDGGFESSRVFFLLPFLLFQGGGMDLSKVG
EKILSSVRSARSLGLLPSVSSSDRPEVPARAAAAAAVARALAGLPPHQRYSLPSSSEELR
SIYGSRPQSQVVEELEEAFYEEDFDPIKHILEHIPSEENELEYFEKQATLRLAQLDRVAE
RLSRHVMEHHEVMVKGMNLVRELEIDLKVANVICMNGRRHLTSSINEVSRDLVVNTDSKK
KQALMDLLPVLAELLHAQDMQAALESLVEEGNYCKAFQVLSEYLQLLDSVSELSAIQEMS
RGVEVWLGRTLQKLDSLLLGVCQEFKEEGYLTVVDAYALIGDVSGLAEKIQSFFMQEVIS
ETHSVLKSIVHEDQDVHMQSSRLTYSDLCLQIPESKFRQCLLRTLAVLFKLMCSYHEIMG
FQLENKVLECPTTNAKSREDGTQDSSSVEESRTATYSADASERTESGNVESHDPVSGGRN
DGGATSSSGSPWYQLRKEAIAFVSQTLQRGRKNLWQLTTSRVSVLLSSSAASSTSIHQFL
KNYEDLNTFILAGEAFCGVEAVEFRQKLKGVCENYFTAFHRQNISALKMVLEKETWLRLP
PETVQIISFAGLVGDGAPLIAASDGKSSNARVLHTSKSANAVDTGATKSGFSPWLRNGNP
FLLKVSGSPKEAHNSSPLNGATSGEYEGNVDNLHGDIGSPHNGDVNHINGSNSMAEEENE
DLLADFIDEDSQLPSRISKSSLSKTYSSHCSNDEFTAQTGSSLCLLRSMDKYARLMQKLE
IVNVEFFKGICQLFEMFFYYIFEAFGQQNMSSSGKGSTDSLTYRLKTALSRITQDCDQWI
KTSSGSPLSPLAHTDVTPTVPQSPNFGPPVGTSFGLKERCAGADTVALVARILHRSRTHL
QSLLLKSNTAVVEDFFVHLVDSVPDLTEHIHRTTARILLHINGYVDRIANAKWELKELGM
EHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLGYGLEIVAETLIEGLSRVKRCTDEGR
ALMSLDLQVLINGLQHFVSINVKPKLQIVEAFIKAYYLPETEYIHWARAHPEYSKNQIVG
LINLVATMKGWKRKTRLEVLEKIE
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagccgaatctgttcccgttcggcagcgttttcgggaatccgtttctgttgaat
ggcgacgctggcggtgacggtggtgatttaaacgacggtggatttgagagctctagggtt
ttcttcttgctcccgtttttgttatttcaaggaggtggaatggatttgtccaaggttggg
gaaaaaatcctcagctccgtacggtccgccaggtcgcttggtctcttgccttctgtttct
tcttctgatcgccccgaggttccagctcgagctgcagcagcagctgctgttgctcgtgct
cttgcaggattgccacctcatcagagatatagtcttccatcaagttctgaagaactgagg
tcaatctatggaagtagacctcagagtcaagtagtggaggagctagaggaagctttctat
gaagaggattttgatccaataaaacacattctggagcatattccttctgaagaaaatgaa
ctagaatattttgagaaacaggccactcttagattagcgcaactggatagagtagcagaa
cgtttatcccgtcatgtcatggagcatcatgaagtaatggtgaaggggatgaatttggtc
agagaattggagatagacttgaaggttgcaaatgtcatctgcatgaatggaagaaggcat
ctaacctcatcaataaacgaggtttcaagggaccttgttgtgaataccgattctaagaag
aagcaagctcttatggacttgcttccagtactggctgagcttcttcatgcacaggacatg
caagcagcacttgaatctcttgttgaggaaggtaattactgcaaggcatttcaagtacta
tctgagtatttacaactacttgatagtgtctcagagctctcagcaatacaagagatgagc
cgtggtgtggaggtttggctaggcagaactcttcaaaagctggattcgctcttgttaggg
gtgtgccaagagtttaaagaagaaggctatttaactgtggttgatgcttatgctttaata
ggagatgtctctggtcttgctgaaaagatacaaagtttcttcatgcaagaagttatctca
gaaactcactctgtattgaagagtattgtgcatgaggatcaagatgtacatatgcaaagc
agtagacttacctacagtgatctatgccttcagatacctgaatctaagtttaggcagtgt
ttgttaagaacactagctgttctgttcaaattgatgtgttcatatcatgaaatcatgggc
tttcagctggagaataaggttttagagtgtccaacaacaaatgccaaatcgagggaagat
ggaacacaagattcttcttctgtagaggagtctagaacagccacttactcagctgatgca
tctgaaaggacagaatctggaaatgtagaatctcatgatccagtttctgggggtagaaat
gacggtggtgcaacatcaagcagtggatctccgtggtatcaattgaggaaagaagccata
gcttttgtttcacaaacccttcagaggggacgtaagaatctttggcaacttacgactagc
cgagtatcagtgttgctttcttcctctgctgcttcttctacgagcattcatcaatttttg
aaaaattatgaagatcttaacacatttatcctggctggggaagccttctgtggagttgag
gcagttgaattcaggcagaaattaaagggtgtttgtgaaaattattttacagcgtttcat
cggcaaaacatatctgcacttaaaatggttttggagaaggaaacctggcttagattgcca
ccagagacggtacaaataattagttttgctgggctggtaggtgatggagcaccattaatt
gctgcatctgatggtaaatcttctaatgctagggtgcttcacactagcaaatcagcaaac
gcagttgacacgggtgccacgaagagtggattttctccttggcttagaaatggaaaccca
tttttgctaaaagtaagcggcagtccaaaagaagctcataattcctccccacttaatgga
gcaacctctggtgaatatgagggaaatgttgataatcttcacggtgatattggttctcca
cataatggtgatgtaaatcatataaatggctccaattctatggcagaagaagaaaatgag
gatttacttgctgattttattgatgaggatagtcaactcccaagtcgaatttcaaaatcc
agcctttcaaaaacttactcttctcattgcagtaatgatgagtttacagcacaaactgga
tcatctctttgtcttctaaggtcaatggataagtatgcgaggttgatgcagaaacttgaa
atagtaaatgttgagttttttaagggcatatgccagttatttgagatgtttttctattat
atatttgaagcatttggtcagcaaaacatgagttcaagtggaaaaggttctactgactct
cttacttatcggttaaagacagctttatcaagaataacacaagattgtgatcagtggata
aaaacttcatcaggatcccctttatctccactcgcacacacagatgtgacacctactgtt
cctcaaagtccaaattttggtcctccagtgggcacctcctttggtctaaaggaaagatgt
gcaggtgctgatactgtagcccttgttgctcggatattgcatagatctagaactcatctc
caatcattgctgctgaagagtaatacagctgtagttgaagatttctttgtgcacctggtg
gattctgtgccagatcttacagagcacatacataggacaaccgcaagaattctgctccac
attaatgggtatgttgatcggattgctaatgcgaaatgggaactgaaagagcttgggatg
gagcacaatgggtatgtggatttattgttgggagaatttaagcactacaaaacaaggctt
gctcatgggggaattcacaaggaggttcaagacctcctcttgggctatggacttgaaatt
gttgcagaaactcttatcgaaggtctatcacgagtgaagagatgtactgatgaaggacga
gctctcatgtcattagaccttcaggttttaatcaatggcctacaacactttgtctccata
aatgtgaagccaaagttacagattgttgaagctttcatcaaggcatattatctgcctgaa
actgaatacatacactgggcacgtgctcatcctgaatacagcaagaatcaaattgtgggg
ttgataaaccttgttgctacaatgaaaggttggaaaagaaaaaccaggttggaagtgcta
gaaaagattgagtga
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