KEGG   Theobroma cacao (cacao): 18590613
Entry
18590613          CDS       T02994                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03020  RNA polymerase
tcc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    18590613
  09124 Replication and repair
   03420 Nucleotide excision repair
    18590613
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcc03021]
    18590613
   03019 Messenger RNA biogenesis [BR:tcc03019]
    18590613
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18590613
Transcription machinery [BR:tcc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     18590613
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     18590613
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      18590613
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 18590613
NCBI-ProteinID: XP_007016297
UniProt: A0AB32USX9 A0A061GWQ3
LinkDB
Position
9:35936983..35939730
AA seq 176 aa
MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR
DGTGFVTFPVKYQCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTTA
NT seq 531 nt   +upstreamnt  +downstreamnt
atgttttttcacatagtattggagaggaacatgcagttgcatccacgccacttcggtcgt
aacctgcgggaaaacctggtatccaagctcatgaaagatgttgagggcacatgcagtggt
agacatggttttgtggtggcaataacgggtatagagaacgttggaaaaggtttaattcga
gacgggacggggtttgtgacattccctgtcaagtatcaatgtgttgtgtttagaccattt
aagggggaggtcttggaagctgttgttactatggtgaataagatgggattctttgcagaa
gctgggcctgttcaaatttttgtttccaaccatttgattccagatgatatggagtttcag
tctggagatatgccaaattatactacctctgatggatcggttaagattcaaaaggatagc
gaagtgcgcttgaagataattggaactcgcgtagatgctactgaaatattctgtattggt
accataaaggacgatttcttgggtgtgattaatgatcccacaacagcttag

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