Theobroma cacao (cacao): 18590778
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Entry
18590778 CDS
T02994
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18590778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18590778
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18590778
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18590778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
18590778
NCBI-ProteinID:
XP_007016562
UniProt:
A0AB32UT43
A0A061GXL8
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All DBs
Position
9:complement(36791531..36797686)
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AA seq
664 aa
AA seq
DB search
MSGLLNSSINGSASNLPDSSGRSFATSFSGQSGAASPVFHHTGTIQGLHNIHGSFNVPNM
PGTLTSRNSTLNNVPSGGVQQPTGSLSGGRFTSNNLPVALSQLSHGSSHGHSGVTNRGGI
SVVGNPGFSSNTNGVGGSIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVG
GGNIGRSISSGGGLSVPGLASRLNLGANSGSGSLSVQGQNRLMSGVLPQGSPQVISMLGS
SYPAAGGPLSQSHVQAVNNLSSMGMLNDVNTNDNSPFDINNDFPQLTSRPSSAGGPQGQL
GSLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDLHQKEQLHDNTMSMMQSQH
FSMGRSAGFNLGGSYSSHRPQQQQQHAPSASSSGVSFSPVNNQDLLHLHGSDIFPSSHSS
YHSQTSGPPGIGLRPLNSQNTVSGMGYDPIIQQYQQHPNQSQFRLQQISAVNQSFREPGV
KSMQAAQSNPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKNFGSPWS
DEPAKGDPEFTVPQCYYAKQPPALHQGYFSKFTVDTLFYIFYSMPKDEAQLYAANELYNR
GWFYHKEHRLWFLRVPNLEPLVKTNTYERSSYHCFDPSSFETIRKDNFVIQYEALEKRPA
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttctatcaacggatcagcatcaaatcttccagacagtagc
gggcgttcttttgctacatctttctctggtcagtctggtgcagcctcccctgttttccat
cacactggaactattcagggcctgcataatattcatggcagctttaatgttcccaacatg
cctggtacgcttacatcaagaaactcaacattaaataatgttccgtctggtggggttcaa
cagcctactgggagcctttctggtggacgatttacatcaaataatctacctgttgctctt
tctcagttatctcatggcagctcccatggacattcaggagtaacaaatagaggaggtatt
agtgttgtaggaaaccctggatttagtagtaacacaaatggagttggtggttctatacct
gggattctgccaacctctgctgcaattggtaaccggaatgcagttccaggattgggagta
tccccaattttgggaaatgcaggtcctaggataacaagttctatgggaaacatggttggt
ggaggcaacattgggaggagcataagctctggaggaggattatctgtacctggtcttgca
tctcgtttgaatttaggtgccaatagtggatctggaagtttaagtgtgcagggacagaat
cgattgatgagtggtgtgcttccacaaggatctcctcaggtaatttcgatgctgggcagt
tcttatcctgctgctgggggtccactttcccaaagccatgttcaagctgtgaacaatctt
agctctatgggaatgctgaatgatgtgaacacaaatgacaattccccttttgacataaat
aatgatttcccccagttgacaagtcgtcctagttctgctggaggtcctcaaggtcaattg
ggttcattacgaaaacaaggtcttagtcccattgttcaacaaaaccaagagttcagtatt
caaaatgaagatttccctgctttacccggatttaaaggtggtaatgctgattatgcaatg
gatttgcaccagaaagaacaacttcatgacaataccatgtcaatgatgcaatcgcagcac
ttctctatggggagatctgcagggtttaacttgggtggatcctattcatctcatcgccca
cagcagcaacagcaacatgctccatcagccagtagtagtggtgtctccttttcacctgta
aacaaccaagatcttctccatttacatggctcagatattttcccatcttcacattcgagc
taccactcgcagacaagcggaccacctgggattgggctaagacctctaaactcacaaaat
acggtttctggtatgggttatgacccgatcatccaacagtatcagcaacacccaaaccag
tcccagtttcgactgcaacagatatcagctgtcaatcagtcatttagggaaccgggcgtg
aaatcaatgcaggctgcacagtctaatccagatccttttgggttacttggtttgctaagt
gtaattaggatgagtgatcctgatttgacttcccttgctcttggaattgatctgacaaca
cttgggttaaatttgaattcctcggaaaatcttcacaagaattttggttctccatggtct
gatgaaccagctaagggtgacccagagttcacagtgccacaatgttattatgctaagcaa
ccaccagctttacatcaaggttatttttctaagttcacagtggacacattattctatatc
ttttacagcatgccaaaagacgaagctcaattatatgctgcaaatgaactttataacaga
ggctggttttaccacaaggagcacagattgtggttcttaagagtccctaatttggagcca
cttgtcaagacaaacacgtatgagagatcttcttatcactgttttgatccaagctcattc
gaaacaatccgtaaggataattttgttatccaatacgaggcgttggaaaagagaccagct
ttacctcaacattaa
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