Theobroma cacao (cacao): 18590940
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Entry
18590940 CDS
T02994
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
18590940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18590940
03009 Ribosome biogenesis [BR:
tcc03009
]
18590940
04131 Membrane trafficking [BR:
tcc04131
]
18590940
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tcc04147
]
18590940
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
18590940
Ribosome biogenesis [BR:
tcc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
18590940
Membrane trafficking [BR:
tcc04131
]
SNARE
SNARE associated proteins
Others
18590940
Autophagy
Aggrephagy
Other aggrephagy associated proteins
18590940
Exosome [BR:
tcc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
18590940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
AAA_17
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
NACHT
AAA_7
NB-ARC
AAA_24
Vps4_C
TsaE
DUF815
AAA_lid_PRS2_C
Zeta_toxin
Sigma54_activat
Sigma54_activ_2
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
18590940
NCBI-ProteinID:
XP_007016834
UniProt:
A0AB32USV2
A0A061GYB4
LinkDB
All DBs
Position
9:complement(37776571..37780803)
Genome browser
AA seq
804 aa
AA seq
DB search
MSHSAESSDSKSGKKDFSTAILERKKSPNRLVVDETVNDDNSVVSMHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADETCETAKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCV
VAPDTEIFCEGEPVRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNTIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRHQI
FKACLRKSPISKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMDEDVEEDVAEINAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSE
TGTTAAPDPFSTSAAGADEDDLYS
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgagtcactctgctgaatcttccgactcgaaatcggggaaaaaagacttttcaactgcg
attttggaaagaaaaaaatcaccaaatcgattggtcgttgacgaaacggtcaacgatgat
aattccgtcgtgtctatgcacccagacacaatggagaagttgcagctctttcgcggtgat
actattctcatcaagggaaagaagcgaaaggacacaatctgcattgctcttgctgatgaa
acatgtgagacggcgaagattaggatgaacaaagttgttcggtcaaatctgagggttcga
cttggagatgttgtgtctgtgcaccagtgccctgatgtgaagtatgggaagcgtgttcac
attcttcccattgatgataccatcgaaggtgttactgggaatctgtttgatgcttacttg
aagccttatttcttggaggcttatcgtcctgtgaggaaaggagatctattccttgttaga
ggagggatgaggagtgtggagttcaaggtcattgagactgacccaggggagtattgtgta
gttgccccagatactgaaattttctgcgagggggaacctgtgaggagggaagatgaggat
aggttggatgaagttggttatgatgatgtaggtggtgttaggaagcagatggctcaaatt
cgtgagttggtggaattgccactaaggcatcctcaacttttcaaatcaatcggtgttaaa
ccacccaaaggaattttgctttacggaccaccgggttctggtaagacattaatagccaga
gctgttgctaatgaaaccggtgctttcttcttctgtattaatggaccagagattatgtcc
aagttggctggagagagtgaaagcaatcttaggaaggcttttgaagaagccgagaagaat
gctccatctatcatatttattgatgagattgattcaattgctcctaagcgtgagaagacc
catggtgaagttgagagaaggattgtttcacagcttttgactctcatggatggactgaaa
tcaagggctcatgtgattgttattggggctactaatcgtccaaatactattgatcctgct
ttgagaaggtttgggaggtttgatagggagatagacattggggttccggatgaagttggt
cgccttgaagtccttcgcatccataccaagaacatgaagctttctgatgatgttgatcta
gaaaggatttcaaaagacactcatggttatgttggtgctgaccttgctgctttatgcact
gaagctgcacttcagtgcataagagagaagatggacgtcattgacttggaggatgagtct
attgatgcagagatacttaattcaatggcagttacaaatgagcacttccaaactgccctt
ggaactagcaatccatctgctctgcgtgaaacagtggttgaagtgcctaatgttagctgg
gaggatattggaggccttgagaatgttaagcgagaacttcaagagactgttcaatatcct
gtggagcacccagagaagttcgagaaatttggcatgtcaccttcaaaaggggtccttttc
tatggtcctcctggatgtggcaaaactctccttgctaaggctattgcaaatgagtgccaa
gcaaacttcatcagcgtcaaaggccctgagctgctcaccatgtggtttggtgagagtgaa
gccaatgttagagaaatatttgacaaagcccggcagtctgcaccttgtgtccttttcttt
gatgagcttgattccattgctacacagagaggaagcagtgttggggatgcaggtggagca
gctgatagggttctaaaccaacttttaactgaaatggatggcatgtcagctaaaaagact
gtttttatcattggggccaccaacagacctgacattattgacccagcccttttgaggcct
ggccggcttgatcagttaatttatattcctctaccggatgaggaatcccgtcatcagatc
ttcaaggcctgtttgagaaaatcacccatctctaaagatgttgatttgagggcactggct
aggtatacccagggttttagtggtgctgatattactgagatttgccagcgagcatgcaag
tatgccatcagggagaacattgaaaaggacatagagagggaaaggaggaggagtgagaat
cctgaagcaatggatgaggacgttgaagaagatgttgcagagattaacgctgcacacttt
gaagagtccatgaagtttgctcgtcggagcgtcagcgatgccgatattcgcaaatatcag
gcatttgcccagactctgcagcagtctaggggttttggatctgaattcagattttcagag
accggaaccacggctgctcctgatcctttttcaacttccgcagctggggcagacgaggat
gatttgtatagctag
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integrated database retrieval system
