Theobroma cacao (cacao): 18591877
Help
Entry
18591877 CDS
T02994
Name
(RefSeq) uncharacterized LOC18591877
KO
K06100
symplekin
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18591877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18591877
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18591877
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18591877
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
18591877
U7-dependent histone pre-mRNA processing factors
18591877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
FEZ
Motif
Other DBs
NCBI-GeneID:
18591877
NCBI-ProteinID:
XP_017981184
UniProt:
A0AB32WPW7
LinkDB
All DBs
Position
8:complement(3758120..3777884)
Genome browser
AA seq
1335 aa
AA seq
DB search
MAIADSRDQALSLLTAANNHADLAVKLSSLKQAKDILSSLDSSSAADLFPYLADLQGSPE
CLVRKFLLEIIEDIALRAIEHSSILVPVLVAFLKDSDSDVVRQSIVSGTNFFCSFLEEMT
LQFQQHGKVDRWLEELWMWMVRFKEGVFFIALEPVPVRTKLLALKFLETYVLLFTSDNVD
SEKVVEATRGSRWTFNVSWLSGGHPVLDPVALTSDAHRTLYILLDMLQSASSLPGSVTIT
VVNCLAAIARKRPLHYGTVLSALLDFNPNFETARGCHNASIQYSLRTAFLGFLRCTNPAI
MESRDILLRALRAMNAGDAADQVIRQVEKMIKSSERASRETRPGRDDQSSSQAAILGDVS
KKRSMPQDNEEPSNSLEMVSKRTRYGLNSHSMSPIQINDSGQDSASVNGLPPNVPLSDGH
WTPVEQMIAMIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKDPPPLTRVGT
LPINQQAGYVNSPAQVLPPPAPTNSLHPPLSTSQLPFTSAATTSSLLSDTSVVSNFAADS
KRDPRRDPRRLDPRRAAVCVGVPSPPVLEDTGAALAEFDGSISSKPFSVPVVENPPVHSM
SNIQSDDKIIEGPLVSGVEQPGPEGIVLGGVEDIVPVLEVQTSSKRAPSPPHTVDGDSAE
MKADAEAKYETDASSFPESDQNFQASENSSSFDETGRDLPVLPLFVELTEEQKRTVRKSA
VQQIAESYLHLHWSDCSQTRNALLARLVAQIDGDDDIIVMLGKQIVADYQHQKGHEIVLQ
VLYHLYSLTVSNSVDNSSYSAVLYDKFLLAVAESLLDTFPASDKSFSRLLGEVPFLPDSA
LRLLDDLCYSDVFDVTGKELRDAERVTQGLGAVWSLILGRPNNRQACLGIALKCAVHSQD
DIRGKAIRLVANKLYQLSYISGEIEQFATNMLLSAVDQRAAGEELLQLASIDEKGERGGS
GDTSISGSSLLEPGASGIDSMGTESTSNSASVVSFPEAQRLISLFFALCKKKPSLLQLSF
DIYGRAPKIVKQAFHRHIPIVIRALGQSYSQLLRIISDPPRGSENLLTLVLQILTQETTP
SPDLIATVKHLYETKLKDATILIPMLSSLSKNEVLPIFPRLVDLPLEKFQLALAHILQGS
AHTGPALTPAEVLVAIHDIIPEKDGLPLKKIMDACSACFEQRTVFTQQVLAKALNQMVDQ
IPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNKQVWRMPKLWVGFLKCVAQTQPHSFP
VLLQLPPPQLESALNKYGSLRSSLAAYASQPATKGSLPRSTLAVLGLANESHMQQPHMST
LHPSDTSSVQGATLT
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggccattgcagattctagagaccaagccctctctctcctcaccgccgcgaacaaccac
gccgatttggcggtgaagctttcgtcacttaaacaggctaaggatattctttcctctctc
gattcttcctccgctgccgatctcttcccgtacctcgccgacctccagggttctcctgag
tgcctcgttaggaaatttcttctcgagataattgaagatattgcattaagagcgattgag
cattcttctatactagtacctgtattagtagcgtttttgaaggatagtgactctgatgtt
gtaaggcaatctattgttagtggcacaaatttcttctgcagttttttggaagaaatgaca
ttgcagtttcagcagcatggtaaagttgaccggtggcttgaagaactatggatgtggatg
gttaggttcaaggaaggggtgtttttcattgcattggagcctgttccagttcggacaaag
ttgctggcgctgaaatttttggagacctatgttctactctttacatctgacaacgttgat
tctgaaaaagttgttgaagctaccagaggaagtagatggacttttaatgtatcatggcta
agtggtggtcatcctgttttggatccagttgcgctaacatcagatgcgcacaggactctt
tacattttactggacatgttacaatcagccagtagtctccctgggtctgtgacaattact
gttgtcaattgtcttgccgccatagcaaggaagagacccctccactatggtactgttctt
tctgcactgcttgattttaatccaaactttgagacagctaggggatgccataatgccagt
atccagtattccttgagaactgcgtttttgggattcctgaggtgtactaatcctgctatt
atggagtcgagagacatattgcttagagctctacgagcaatgaatgctggggatgctgct
gatcaagtcatcagacaggttgagaaaatgataaaaagtagtgagcgtgcttcacgggaa
actcgtccaggcagggatgatcaatcgtcaagccaagcagctattttaggggatgtgtca
aagaaaaggtctatgcctcaggataatgaagaaccaagcaatagtcttgagatggtctcc
aagcgcactcgctatggtctcaattcccactcaatgtcacctattcaaataaatgattct
gggcaggattcagcttctgttaatggactgcctcctaatgttcctctttcagatggccat
tggactcctgttgagcaaatgattgcaatgattggtgccttacttgctgaaggagaaaga
ggtgctgaatctcttgaaattcttatttcaaaaattcatcccgatctgctggctgatatt
gtcatcacaaatatgaagcacttgcctaaggatcctccacctttaacaagggttggaaca
ttgccaataaatcaacaagctggttatgtaaatagtccggctcaagtcttgccacctcct
gctccaacaaattctttgcatcctccactttccacatcacaattgccttttacctcagct
gctacaaccagttcattattatctgatacatcagttgtcagtaattttgctgcagattcc
aaacgtgacccaagaagggatcctcgtcgcctagatccacgacgggctgctgtatgtgtt
ggagtgccatctccacctgttctggaggacactggtgctgcactggctgagtttgatggt
tctatttctagtaagcctttttcagtaccagttgttgaaaatccccctgtgcattccatg
tctaacatccaaagtgatgacaagatcatcgaaggtccattggtttctggtgttgagcaa
ccaggtcccgaagggattgtcctgggtggtgtggaagacattgttccagttctagaggtc
cagacttcttccaaacgtgcaccttctcctcctcatacagttgatggagattcagctgaa
atgaaggcagatgctgaagccaaatatgagactgatgcatcatcttttccagagtctgat
cagaattttcaggcttctgaaaactcatcttcttttgatgagactggtcgtgatttacct
gtactaccactatttgtggagctaactgaagagcagaaaagaactgtgagaaaatcagca
gtccaacagattgctgaatcatacctgcatcttcattggtcagattgtagtcagacacgc
aatgcgttacttgctcgactggttgctcagattgatggtgatgatgacatcattgttatg
ttgggaaagcaaattgttgcagattaccaacaccaaaagggtcacgagattgtattgcaa
gttctctaccatctatattctcttacagtctcaaattcagttgataactcttcatattct
gctgttctttatgataaattcctcttggcagtggctgaatctttgctggacacttttcca
gcctcagataagtcatttagtagacttcttggtgaagttccatttctgcctgattcggcc
ttgagactattagatgatctctgctattctgatgtatttgatgttactggaaaagagctt
cgtgatgctgagcgtgtgacgcagggccttggcgcggtgtggagtttaattttgggacgt
ccaaataataggcaagcctgcttaggtatagcattgaagtgtgctgtccattctcaagat
gacattcgaggcaaagctatccggctggtagcaaacaaactttatcagctgagctacata
tctggggaaattgagcaatttgcaacgaatatgttgctgtctgctgtggatcagcgtgct
gcaggtgaagagttgttgcagcttgcgtccattgacgaaaaaggcgaaaggggtggaagc
ggggacacatctattagtggctccagtcttttagagcccggagcttctggaattgactcc
atgggtacagaatcaacaagcaatagtgcttcagtagtgtcatttcctgaagctcaaaga
ctcatttctctgttttttgctttatgtaaaaagaagcctagtcttcttcaactctcattt
gatatttacggccgagctccaaaaattgtaaagcaggcttttcatcgccatatccctatt
gtaataagagccttaggtcagtcttattctcagttgctccgaataatatctgacccacca
cgaggaagtgaaaatcttttgacactggtgctgcaaatattgactcaagagacaacccct
tctcctgatttaatagctactgttaagcatttatatgaaactaagctaaaggacgctacc
atccttattccaatgttatcttcactttccaagaatgaggtgttacctatttttccacgg
cttgttgaccttccattggaaaagttccagcttgcacttgctcacatattacagggttca
gctcatacaggtcctgccttgacccctgccgaagtgttggttgccatccatgacatcatt
cctgaaaaagatggccttccactcaaaaagataatggatgcttgctcagcttgttttgaa
cagcgcacggtttttacacagcaggtcttagcaaaggccttgaatcagatggttgatcag
atcccacttcccctacttttcatgcgaacagttattcaggcaattgatgcttttcctacc
ctggttgattttgtcatggaaatcctatccaaacttgtgaacaaacaggtatggagaatg
ccaaagttgtgggttgggttcttgaagtgtgtggctcagacacaaccgcattcttttcct
gtattgttacagttgccacctccacaacttgaaagtgcactgaacaaatatggtagcctc
agaagttccctagctgcttatgcaagccaaccagctacaaaaggttcactgcctagatca
acacttgcggttcttggtcttgcaaatgaatcacatatgcagcaaccccatatgtcaacc
ttgcatccttcagacacttcctcagttcagggagcaactctgacatga
DBGET
integrated database retrieval system
