Theobroma cacao (cacao): 18592331
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Entry
18592331 CDS
T02994
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog A
KO
K11267
sister chromatid cohesion protein PDS5
Organism
tcc
Theobroma cacao (cacao)
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tcc03036
]
18592331
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18592331
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
18592331
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
18592331
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
HEAT_GCN1_C
HEAT
Cnd1
HEAT_EF3_N
TPR_DNAAF5
TOR1L1_N
HEAT_GCN1
HEAT_DAAF5
BRCA2
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
18592331
NCBI-ProteinID:
XP_017981379
LinkDB
All DBs
Position
8:6419867..6437712
Genome browser
AA seq
1438 aa
AA seq
DB search
MDESSLQLISGIGAKLEQLTRPSKDVIVKSLRKVVSVLSQIEQPSVVEVATKALVVGKLE
DVTKPLRKSIVKHGLSNHTDKDVRLLVAICVSEFFRILAPQPPFADKYLRDMFKLILSMF
MELADTTSAFFSRRVKILETVAQCKCCVIMLDIDCSDLILEMFNIFFSVVREHHQQSLIN
DILSIMTHILNEEVSHQLTDVILRNLVQESKGATSAASQLAASVIQSCAEKLQPFVCGFL
TSCSLDRDAVGSELKEFYHEIVLKLFQCAPEMLNAIIPNLTQELMTDQVDVRIKAVNLIG
KLLLRPEYRLAQRYHALFVEFLKRLCDKSSEVRVTALQCAKACYLANPSGIESHELLTAI
EDRLLDFDDKVRMQAVIVACELAGSNLKYISSKLISEVIERLRDKKISVRKKALQKVMEV
YRDYCNKCAEGHITMCDHFEQIPCKVLMLCYDKDCKEFRSQNIELVVAEELFPVLLPVEE
RARHWIHLFSLFSPLHVKALSAILSQKRRLQTEMRNYLAIRKEKENSSEDMKKKLKSSFV
KMSASFPDPSKAEECFDKLSQMKDNNIFTSLGLLLDEVTLKNALVIRDKFLKVIGDKHPH
FEFLQLLSSKCSFNIFDSEHVCCILSLISTSGLGSNNLEAFSIELLLVIISNFPSLMRGS
ELQFRLLFEEKYLIHDKIIQVLAKVGSHISVNFSDFYPVLKKICLEGTRTQSKYAVSAIA
SLIDVPKQYVFTELCEELVDSLHSGQNIATVLQSLGCIAQYSVSTFEDLDQEITQHVYKN
IFQAKSLDDLSVTEDSSGCTVTCKLKIYGLKMLVKSFLPHRGSQVNRQINPLLGILLKML
QKGDMFDNIFSCTYGDPLDLGLHKGSASDKAYIRLAAAKSVLQLSRRWDLHISPDIFRFT
ILMAKDSSSFVRRLFLDKTHKLLKEHVIPIRYACAFTLATSDSLKDLQHDSFKYMVEFIK
EYSREARIRQTSMSQGGSIMDFPAYIVVFLIHLLVHDAGFPSEDCQDEAMYAQFCGPLLS
FLNASMNSSVVDGDLDLVNNAALYLNYIFRAIKRAKDAVDAQRTPRLHFLADIGISAVNS
LHRNGISSVCTLGTILLPSSLYKITPMESEEANLKFLTQSFVERVVHVFKSQVSLPVGSV
HKRGRKCHEDGTLNMVLGKQVDFSTCGALETHKRSTRMETSSGRRRGHVVPPNALVSIGS
HNKGFTEELEYGASNSSEAALEKRQPFSSSGSVTQKPSQMESQVSTQKFERSNALKGNIG
AGKIINAEASNSRKVKFNIASKELPSANEVLIGQRIKVWSTFDSCFHSGTVDDFNPENNT
HKITCDNGEVEILCLDSESWETISDCSLTEREVVPSDKANTLHLRQCGKDTLDKFRGDAN
QQSKTKLNMEDRKFRSRKVPLSEKRKKGQILSRDLSSVSEIINIDEDAVAKRTRRRKL
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtcctcgttgcaactcatctctggaatcggcgccaaactcgaacaactcact
cgtcctagcaaagatgtcatcgtcaaatctctccgtaaagttgtgagtgtgttgtcgcaa
atagagcagccttcagttgttgaagttgccacaaaggcgctagttgtgggaaaactggaa
gatgtcacaaagcctttgaggaaatctattgttaagcacggtctatctaaccacactgat
aaagatgttagacttttggtggccatttgtgtcagtgaattttttcggatcctggcacct
caaccaccttttgcagataaatatcttagggatatgtttaaactcattctcagcatgttc
atggagcttgctgatactaccagcgcattcttctcaaggagggttaagatattggagact
gttgctcaatgtaaatgttgtgtgataatgctggatattgactgcagtgatttgattctt
gagatgtttaatatttttttctcggttgtgagagaacaccatcaacagagtttaatcaat
gatattttgtctataatgactcatattttaaacgaggaagtgtctcaccagcttacggac
gtaattttgcgaaatcttgtacaagagagtaagggtgcaacttctgcagcttctcagctt
gctgcctctgttatccaaagttgtgcagaaaagcttcagccctttgtttgtggattttta
acatcttgctccttggatagagatgctgtagggagtgagctcaaagaattctatcatgag
attgtgttaaaactttttcaatgtgctcctgagatgcttaatgctattatccccaactta
acccaggaattaatgactgatcaggttgatgtccgaataaaagctgttaatctaattgga
aaacttcttttacgacctgaataccgtcttgcacaaagatatcatgctctctttgtagag
ttcttgaaaagattatgtgacaaatcttcagaagttagagtgactgctctacaatgtgct
aaagcttgttacttggccaatccctcagggatagaatcccatgaacttctcactgccatt
gaagatcgactgttggactttgatgataaagtgagaatgcaggcagtgattgttgcctgt
gagcttgctgggtctaaccttaaatatatttcatccaaactaatatctgaggttatagag
aggcttagggataagaagatttctgttagaaagaaagccctgcagaaagtgatggaagta
tatcgagattattgtaacaagtgtgcagaaggccacatcacaatgtgtgatcactttgag
cagattccatgcaaagtcttgatgctttgctatgataaagattgcaaagaattcaggtcc
caaaacatagaacttgttgttgcagaggaattatttccggtgcttcttccagttgaagag
agggcaagacactggatccatttgttttctctttttagccctttgcatgtgaaggccctg
agtgctattttatctcagaaacgaaggttgcaaactgaaatgcggaattatttggccata
cggaaagagaaggagaatagttcagaggatatgaagaagaaattgaagagttcttttgtt
aaaatgtcagcttcattcccagatccttccaaagctgaagagtgctttgataaattgagt
cagatgaaggacaacaacattttcacttcactgggcctgttgctggatgaagtgacactt
aaaaatgccctggtgataagagataaattccttaaagtgataggagataaacatccacat
tttgagtttttgcagttgctctcctcaaaatgctcgtttaatatatttgactcagagcat
gtttgttgcattctcagtctcatttccactagtgggttgggaagcaataatttggaggct
ttttctattgaactactcctggttatcatcagcaatttcccatctctcatgaggggttca
gaattgcagtttcgtctgttgtttgaagagaaatatctgattcatgataagatcattcaa
gttttagcgaaagtggggtctcatatctctgtcaatttcagtgatttttaccctgttttg
aagaagatctgtcttgagggaactcgtactcagtcaaaatatgctgtttctgcaattgct
tcattaatagatgtgcctaagcaatatgttttcacagaattatgtgaggaacttgtggat
tctctacatagcgggcagaatattgcgactgttttgcagtctttgggctgtattgcccaa
tattcggtttcaacttttgaagatcttgatcaagaaatcacacaacatgtctataaaaat
atttttcaggcaaagtcattggatgatctttctgtcactgaggatagctctgggtgtact
gttacttgcaaattaaagatttatgggcttaagatgcttgtcaagagttttttgccacat
cgaggatctcaggtcaatagacaaattaatccattgttgggcattttgttgaagatgctc
cagaagggtgacatgtttgataatattttttcatgtacatatggagatccattggacctt
gggctacacaaaggcagtgcaagtgacaaggcttatataagattggctgctgcaaaatct
gttctccagctttctagaagatgggacctacatatttctcctgatatttttcgcttcaca
attttgatggcaaaggattcttcttcttttgtcaggagattatttcttgataaaacacac
aagctgttgaaggaacatgttatacctataagatatgcttgtgccttcactctggccact
tctgatagcctcaaggacctacagcatgattcattcaaatatatggtggaatttatcaag
gaatacagtagagaagctcgaatacgccaaacatccatgtcgcagggagggtcaattatg
gatttcccagcatacatagtggtattcttgatccatcttcttgtgcatgatgcaggcttc
ccatctgaagattgtcaggatgaagcaatgtatgctcaattttgcggtccacttctttca
ttcctaaacgcatcaatgaactccagtgtcgttgatggtgatttggatcttgttaataat
gctgccttgtatttgaattatatatttcgtgctattaaaagagctaaggacgctgttgat
gctcagagaactcctaggctgcactttctagcagacattggaatttctgctgtaaattcc
ttacatcgaaatggcatctcatctgtttgcacactgggaacgatcttgcttccatcatca
ttatataaaataactcctatggaaagtgaagaggctaatttgaaatttcttactcaaagt
tttgttgagagggtagttcacgttttcaagtcgcaagtctctctgccagttggctctgtt
cataaacgtggtcgaaagtgtcatgaggatggtactttgaacatggtattgggcaagcaa
gttgatttttcaacttgtggggcacttgaaacccataagagatctacaaggatggaaacc
agttcaggacgtaggcgaggacatgttgttcctccaaatgcactggtatctattggatcc
cataataagggttttactgaggagctggaatatggtgcatctaacagttccgaagcagct
ttagaaaaacgtcaacctttttcttcttctggttctgtcactcagaaaccttctcagatg
gaatcacaagtttcaactcagaaatttgaaagaagtaatgctttgaaaggaaatattggg
gcaggtaagattattaatgctgaagcttccaatagtcgcaaagtgaagttcaatattgct
tcaaaagaattgcctagtgcaaatgaggtattaattggacagcggatcaaagtatggtct
acctttgatagctgttttcattcgggcactgtggatgactttaaccctgaaaacaacact
cacaagatcacatgtgataatggggaagttgaaatattatgcttggacagtgagagctgg
gagacaataagtgactgttccttgacagagagggaggttgtaccgtcagataaggcaaac
accttgcatttgcggcaatgtggcaaagacacacttgataaatttagaggtgatgctaat
caacagtcgaagacgaaattaaatatggaggatagaaagtttcgtagcagaaaagttccc
ttgtctgagaagagaaagaagggacagattttatccagagacttgtcatcagtgtcagaa
attatcaatatagatgaagatgctgtcgctaaaagaactcggagaaggaaattataa
DBGET
integrated database retrieval system
