KEGG   Theobroma cacao (cacao): 18592371
Entry
18592371          CDS       T02994                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03030  DNA replication
tcc03410  Base excision repair
tcc03420  Nucleotide excision repair
tcc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    18592371
   03410 Base excision repair
    18592371
   03420 Nucleotide excision repair
    18592371
   03430 Mismatch repair
    18592371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tcc03032]
    18592371
   03036 Chromosome and associated proteins [BR:tcc03036]
    18592371
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18592371
DNA replication proteins [BR:tcc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    18592371
  DNA Replication Termination Factors
   ELG1-RFC complex
    18592371
Chromosome and associated proteins [BR:tcc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    18592371
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     18592371
  Check point factors
   HRAD17(Rad24)-RFC complex
    18592371
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_22 RCF1-5-like_lid AAA_16 AAA_11 AAA_assoc_2 ATPase_2 AAA_5 AAA_14 AAA_24 DUF815 AAA_30 ResIII RuvB_N AAA_7 AAA_19 DNAX_ATPase_lid bpMoxR AAA_3 nSTAND3 SLFN-g3_helicase TniB AAA_28 AAA_25 TIP49 AAA_2 Mg_chelatase ABC_tran
Other DBs
NCBI-GeneID: 18592371
NCBI-ProteinID: XP_017981245
UniProt: A0AB32WQ79
LinkDB
Position
8:6729556..6734574
AA seq 363 aa
MAEVVSLMDIDEDDNHQKENHSRKLSKGKNVVTTNDTKATPWVEKYRPQSLADVAAHRDI
VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAHYHNMILELNASDERGIDVV
RQQIQDFASTQSFSFGAKSSVKLILLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
NKIIPALQSRCTRFRFAPLDPIHVTERLKHVIEAERLDVPDCGLAALVRLSNGDMRKALN
ILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAESFKRISEIKTRKGLALV
DIVREVTMFVFKIKMPSDVRVQLINDLADIEYHLSFGCNDKLQLGSLIATFTRARSALVA
AAK
NT seq 1092 nt   +upstreamnt  +downstreamnt
atggcggaagtagtttctctgatggacatcgacgaagacgacaatcaccagaaagaaaac
cactctcgaaagctaagcaagggcaaaaatgtcgtcacaaccaacgataccaaagccact
ccctgggtcgagaagtaccgccctcaatccctagccgacgtcgccgctcaccgcgacatt
gtcgacaccattgacaggcttacgagcgagaacagattgccgcatcttctgctgtatggt
cctcccggtacgggcaaaacatccaccattctggctgtggcacggaagctttatggagca
cattatcataatatgattctcgagctgaatgcttcagatgaaaggggcattgatgttgtt
aggcaacagattcaagattttgctagcactcaaagcttctcatttggggcaaagtcatca
gtaaagttgattttacttgatgaggcagatgctatgacaaaggatgcacaatttgccttg
cgtagagttatcgagaaatacacaaagaatactaggtttgcactgatctgtaatcatgtc
aacaagatcattccagcactacagtccagatgtactcggttccgatttgcacctcttgat
cctattcatgtcactgagcgacttaaacatgttatagaggctgaaaggctggatgtacct
gattgtggcttggcagcacttgtacggcttagcaatggtgacatgagaaaggctttaaac
attttgcagtcaacacacatggcttctcagcagattacagaagaagccgtttatctctgt
actggaaatccgttgcctaaagacattgagcaaatatcttactggcttctgaatgaatca
tttgctgagagttttaaacggatatctgaaatcaagacaaggaaaggattggccttggtc
gatattgtaagggaagtgacaatgtttgttttcaagattaagatgccctcagatgttcga
gttcaattaattaacgatttggctgacatagagtatcatttgagttttgggtgcaatgat
aagttgcagcttggatcactcattgctactttcacacgagctagatctgcactggttgct
gcggcaaagtag

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