Theobroma cacao (cacao): 18592380
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Entry
18592380 CDS
T02994
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18592380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18592380
03036 Chromosome and associated proteins [BR:
tcc03036
]
18592380
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
18592380
Chromosome and associated proteins [BR:
tcc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
18592380
PBAF complex
18592380
GBAF(ncBAF) complex
18592380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
CLP1_P
Zn_ribbon_2
DUF7685
DUF3306
Motif
Other DBs
NCBI-GeneID:
18592380
NCBI-ProteinID:
XP_007019141
UniProt:
A0AB32UW71
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Position
8:6793756..6800510
Genome browser
AA seq
780 aa
AA seq
DB search
MPASPSDGRGRWKRRKRERRAKHHQEENDVVPEEDEEEDNNNNNNNDDLDNHRENSGDDA
GGAVTDPSLAGPSESEVLADGGVRISEFPAVVKRTVNRPHGSVMAIVAAERAGLVGDSKG
HQQVALAVLENVSYGQLQAVSAEAPVVDPEKYVITSPPIMEGRGVVKRFGSRVHVLPMHS
EWFSPASVHRLERQVVPHFFSGKSPEHTPEKYMECRNHIVVKYMDNPEKRITVSDCQGLI
DGINIEDLTRIVRFLDHWGIINYCATSRSHEPWNVGSYLREDPNGEVHVPSAALKSIDSL
IKFDKPKCRLKAADVYSSSSCHDDDFSDLDNKIRERLAENHCTSCSQPIPTSYYQSQKEV
DTLLCSDCFHDGRFVSGHSSIDFVRVDSAKDYDDLDGESWSDQETLLLLEAMEIYNENWN
EIAEHVGTKSKAQCILHFLRLPMEDGLLENVEVPSMPKSTSVSNGDVRGRLHSNMNGSVS
GPSLQDSDSENRLPFANSGNPVMAMVAFLASAVGPRVAAACAHASLAALSEDVQKEGSGP
GNRMNTEGVHSREGGFHGSIHQKEENSAVHGSFGQNEAEVHPLSAEKVKAAAKAGLAAAA
MKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMKECEQVEKARQRFASE
RARIVSARFGPAGVTSQMTLPGVASPMVNNSIGNNRQQVMSASPSQPSTSGYGSNQAVHP
HMPFMPRQPMFPTGPRLPLTAMQASTSAPPNVMFSSPGNAQPSLNHPLMRSVSGTSSGLG
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttctccttcagatggtcgaggtcgatggaagcggcggaagcgagagcgaaga
gctaaacaccaccaagaagaaaacgacgtcgttccggaggaagacgaagaagaagacaac
aacaacaacaacaacaacgacgacctcgacaaccaccgcgagaactccggggacgatgcc
ggcggagccgttacggatccatctttagcggggcccagcgagagtgaggtcctcgccgac
ggtggagttcgcatctcggagttccccgccgtggtgaagcgcacggtgaaccgtcctcat
ggttccgtaatggcgatcgtggcggctgaacgggcgggtttggttggggatagcaagggg
caccaacaggtggcgctggcggttttggagaatgtttcgtacggacagttacaggcggtt
tcggcggaagctcccgttgttgatccggagaagtatgtgattacctctcctccgataatg
gaggggcgtggcgttgttaagaggttcgggagtagggttcatgtcctgccaatgcattca
gagtggttttcaccagcctctgtgcatcgactagaaagacaagttgtgccgcattttttc
tcaggaaaatcaccagaacatacgccagaaaaatatatggaatgtagaaaccacattgtt
gtcaaatacatggataatccagagaagagaatcacagtttctgattgccagggattgata
gatggtatcaatattgaggatttgactcgaatcgttcggtttcttgatcactggggaatt
atcaattattgtgctacttcacgaagtcacgagccatggaatgttgggtcctacttaagg
gaggacccaaacggtgaggttcatgtgccatcagctgctttaaagtctattgatagtttg
atcaaatttgacaagccaaaatgtaggctcaaggcagctgatgtttattcatcatcatca
tgtcatgatgacgatttctctgacttggacaacaaaatacgagagcgcttagctgaaaac
cattgcacttcttgttcgcagcctattcctacttcatattatcagtcacagaaggaggtt
gatacactactgtgctctgattgctttcatgatgggagatttgtttctggtcattcaagc
atagattttgttagggtggattcagcaaaagattatgatgacctagatggagaaagttgg
agtgatcaggaaacgctactgctgcttgaggcaatggaaatttacaatgagaactggaat
gaaatagctgagcatgttggcactaagtcaaaagcacaatgcatacttcattttctacgt
ctacccatggaggatggcctactggaaaatgtggaagttccaagcatgccaaaatcaacg
agcgtttcaaatggagatgttcgtggaagattgcactcaaatatgaatgggagtgtatca
gggcccagccttcaagattcagattctgaaaacaggcttccttttgcaaattctgggaat
ccagttatggctatggttgcttttctggcctctgctgttggacctagagttgctgcagcc
tgtgcccatgcatccttggcagcattgtctgaagatgtacagaaggaaggttcagggcct
ggtaataggatgaacacagagggtgtacatagcagagaaggtggttttcatggttctatt
catcaaaaagaggagaactcggcagtacacggttcatttggtcaaaatgaggcagaggtt
cacccactatctgcagaaaaagttaaagctgctgccaaagcgggccttgctgctgcagcc
atgaaggcaaaactgtttgccgatcatgaggaacgagaaattcaaaggctatcagctaat
atcataaatcatcagttgaagagattggagctgaagctgaagcagtttgcagaagtggaa
acgttactcatgaaagaatgtgaacaagtggagaaagcaaggcaaaggtttgcttctgag
agggcccgcattgtatcagctcgatttggacctgctggagtcacgtcacaaatgactctg
cctggtgttgcttcccccatggttaacaatagcattggcaacaacaggcaacaggtaatg
tcagcctcgccttcacagccaagcacttctggatatggcagcaaccaagcagtacatccc
catatgccattcatgccacgtcaaccaatgtttccaacgggcccaaggttgccccttacg
gccatgcaggcatccacttcagctcctcccaatgtcatgttcagctcacctggtaatgca
caacccagtcttaatcatcccctgatgaggtcggtatctgggaccagctctggtctgggt
tga
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