Theobroma cacao (cacao): 18592527
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Entry
18592527 CDS
T02994
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
18592527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18592527
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18592527
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
18592527
RNA polymerase I system
18592527
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
18592527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
Spt5-NGN
KOW4_SPT5
KOW2_Spt5
KOW
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
ProQ_C
PSP1
Motif
Other DBs
NCBI-GeneID:
18592527
NCBI-ProteinID:
XP_017981450
UniProt:
A0AB32WT08
LinkDB
All DBs
Position
8:8725051..8733125
Genome browser
AA seq
1041 aa
AA seq
DB search
MVRRRDEEDDDVEDEDYEDEDDQLLDDEDYDEDEDEGRGGGCSSRKRRRSDFIDDVAEED
DEEDEDDDDEGYGGGRGGRRQNKAPRSGSQFFDLEAQVDSDDEEEEDEGEDDFIVDNGAD
LPDEDVGRRLHRRPLPLREDEQEDVEALERSIQARYARSSHTEYDEETTEVEQQALLPSV
RDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSVIALDHLKNYIYIEADKEAHVRE
AVKGLRNIFATKIMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAQVVDVDNV
RQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNVDEARELHIRVERRRDPMTG
DYFENIGGMLFKDGFLYKTVSMKSISAQNIKPTFDELEKFRTPSENGESEMVGLSTLFAN
RKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKELCKYFEP
GNHVKVVSGTKEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTKIGEY
ELHDLVLLDNNSFGVIIRVESEAFQVLKGVPERPEVSLVKLREIKCKLEKKFNVQDRYRN
TVSVKDVVRILEGPCKGKQGPVEHIYKGVLFVYDRHHLEHAGFICAKADSCCIVGGSRSN
GDRNGESFSRFGGFKTPPRIPPSPRKFSRGGPPFDTGGRHRGGRGGHDALVGTTVKIRQG
PFKGYRGRVVDIKGQSVRVELESQMKVVTVDRNFISDNVVISTPYRDTSRYGMGSETPMH
PSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEEGNPASWGTSPQ
YQPGSPPSRAYEAPTPGSGWASTPGGNFSEAGTPRDSSSAYANAPSPYMPSTPSGQPMTP
SSGSYIPGTPGGQPMTPGTGGLDIMSPVIGTDNEGPWFMPDILVNVRKSGDETLGVIQEV
LPDGSCKVALGSNGSGDTVIALPSEMEIVAPRKSDKIKIMGGSLRGVTGKLIGVDGTDGI
VRIDDSLDVKILDLVILAKLP
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggtgagacgaagagacgaggaagatgatgacgtggaagacgaagactacgaagatgaa
gatgaccagctgttggatgacgaggattacgacgaggacgaagatgaagggaggggcggt
ggctgttccagtaggaagcggcggagatctgattttatcgatgacgtggcggaggaagat
gatgaggaagatgaagatgatgacgatgagggttatggtggtggtcgtggtgggagacga
cagaacaaggctccgcgtagcggctctcagttttttgatcttgaagcacaggtcgatagc
gacgatgaagaggaagaggacgagggagaagacgacttcatagttgataatggagctgat
ctacctgatgaggatgttggtagaaggctgcaccgtcgcccattacctctccgggaagat
gagcaagaagatgttgaagctcttgagagaagcattcaggctaggtatgccagatcaagt
cacactgaatatgacgaggagacaactgaagtggagcagcaagcacttttgccatcagta
agggatccaaagctgtggatggtgaaatgtgcgattggtcgtgaacgagagaccgcagtt
tgcctcatgcagaaatacatcgataaaggatctgaattgcaaatcaggtctgttattgct
cttgatcacctcaagaactatatttatattgaagcagacaaggaagcccatgtgagggag
gctgtcaagggtctacgaaatatatttgcaacaaagattatgcttgttccaataaaagaa
atgactgatgttttatcagttgaaagcaaagcgattgatctttcaagagatacctgggtc
aggatgaagatcgggacatataagggtgatcttgctcaagtagttgatgtggataatgtg
cggcaaagagtcactgtaaaattgattcctaggattgacttacaggctctggcgaataaa
ctggaaggaagagaagttgcaaagaagaaagcctttgtccctcctcctcgttttatgaat
gttgatgaagctagggaacttcatattcgtgtagagcgcagacgagatccaatgactggt
gattactttgagaatatcggtggcatgttgtttaaagatgggttcttgtacaaaacagtg
tcaatgaagtcaattagtgctcagaacattaaaccaacttttgatgaacttgaaaagttt
cggacacctagcgagaatggagaaagtgaaatggttggtttgtcaacattgtttgcaaac
aggaagaaaggccatttcatgaagggtgatgctgttattgttgtcaagggagatctgaaa
aatttaaagggatgggttgaaaaggttgaggaagagaatgtccatatcagaccagaaatg
aaaggccttcctaaaactcttgctgttaatgaaaaagagctgtgtaagtactttgagcct
gggaatcacgtgaaggttgtgtctgggacaaaggaaggtgcaactggtatggttgtcaag
gttgagcagcatgtgctcatcattttatccgatacgaccaaagaacatatccgtgttttt
gctgatgatgttgttgagagctctgaagtaactactggtgttacaaaaattggagagtat
gagcttcatgaccttgtgctactagataacaatagctttggtgtaattatacgtgtagaa
agtgaggcttttcaggttcttaagggggttccagagagaccagaggtttctcttgtaaaa
ttgagggaaataaaatgcaagcttgagaagaaatttaatgtgcaagacagatatagaaat
actgtttctgtgaaggatgtggttaggatccttgagggtccttgtaaaggaaaacaaggc
cctgtagagcacatatataaaggagtcttgttcgtctatgatcgacatcaccttgaacat
gctggctttatatgtgctaaagctgattcttgttgtatagtgggaggatcacgatcgaat
ggtgacagaaatggtgaatctttctcaagatttggaggcttcaagactccaccccgtata
ccaccatcaccaaggaaattttctaggggaggtcctccttttgatactggagggaggcac
agaggtggaagaggagggcatgatgctttggttggtactacggtgaaaattcgccagggc
cctttcaagggttaccgtggacgtgttgtagatattaaaggtcaatcagttcgagttgag
ttggagtctcaaatgaaggttgttacagttgatcgcaactttatatctgataatgtggtt
atttctacaccctaccgcgatacatcccgatatggtatgggaagtgaaactcctatgcac
ccttcacgaactccattacatccatacatgactcctatgagagatgctggagcgacacct
atccatgatggcatgagaacacctatgcgtgacagggcctggaatccttatgcaccaatg
agcccacccagggataattgggaagaaggaaaccctgcctcttggggtactagtccacaa
tatcagccaggaagtcctccttcaagagcatatgaagcacctactcctggttcaggttgg
gctagtactcctggtggtaattttagtgaggctggaacaccaagggatagcagttcagct
tatgccaatgctccaagcccttatatgccatcaacccccagtgggcagcctatgactcca
agctcgggatcctatattcctggtacacctggagggcagccaatgacaccaggaactggt
ggtcttgatattatgtctcctgttataggtactgacaatgaaggaccatggttcatgcca
gatattttggtcaatgtgcgcaaatctggagatgagactcttggagttatccaagaggtg
cttccggatggctcctgtaaggtggcccttgggtcaaatggtagcggtgatacagtaatt
gcccttcccagtgagatggaaatagtagcaccaaggaaatcagacaagatcaaaataatg
ggtggctcactacgtggtgttactggcaagttaattggtgtggatggaacggatggcatt
gtaaggatagatgacagtcttgatgtcaagatattggacttggttatactagcaaaatta
ccatga
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