Theobroma cacao (cacao): 18593061
Help
Entry
18593061 CDS
T02994
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18593061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcc03041
]
18593061
Enzymes [BR:
tcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18593061
Spliceosome [BR:
tcc03041
]
Complex C
Other components
Step II factors
18593061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
Flavi_DEAD
SLFN-g3_helicase
AAA_30
AAA_24
ResIII
nSTAND3
T2SSE
AAA_16
Sigma54_activat
ATPase
NB-ARC
PhoH
Sigma54_activ_2
AAA_7
SRP54
ABC_tran
Jak1_Phl
Motif
Other DBs
NCBI-GeneID:
18593061
NCBI-ProteinID:
XP_007020157
UniProt:
A0AB32UWV5
LinkDB
All DBs
Position
8:17783115..17789354
Genome browser
AA seq
1044 aa
AA seq
DB search
MSSNRPKHIKPSPSSMFVGASPDARLVSPWMGDRTPRSAGMLFGTASGASPWDYASPSPV
PIRASGASIKSSSSRYGRTSHQVSFSRESSESFEDEGDKTGLAEEHNYEITESMRLEMEY
NSDRAWYDREEGNTMLDADSSSFFLGDEASFQKKEVDLAKRLVRRDGTRMSLAQSKKLSQ
LTADNAQWEDRQLLRSGAVRGTKVQTEFVYEDERKVILLVHDTKPPFLDGRIVFTKQAEP
IMPIKDHTSDMAIISRKGSTLVRGIHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQID
ADTTEVGEHGEIDFKEDAKFAQHLKKGEAASEFAKSKSIAEQRQYLPIYSVRDELLQVIR
ENQIVVVVGETGSGKTTQLTQYLHEDGYTKNGVVGCTQPRRVAAMSVAKRVSEEMETELG
DKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDADLDKYRVIVMDEAHERSLSTDVLFG
ILKKVAAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILYSKTPCEDYVEA
AVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERIEQLISSTRKGVSKLLILPIYSQ
LPADLQAKIFQKAEDGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNSKMGMDALQ
VFPVSRAAADQRAGRAGRTGPGQCFRLYTESAYLNEMLPAPVPEIQRTNLGNVVLLLKSL
KIENLLDFDFMDPPPQENILNSMYQLWVLGALNCVGGLTDIGWKMVEFPLDSPLAKMLLT
GERLQCIDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKAN
QYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCGYDWDVVRKAICSAYFHNA
ARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPEYVVYHELILTTKEYMQYVTAVEPRWL
AELGPMFFSVKESDTTLLDCKKRQREEKTAMQEEKENLRKEQAEAKRESKEKKRQKRAKW
QQQVSLPGLRQGSSTYLRPKKFGL
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgagttctaatcggcctaaacacatcaaaccttctccatcttcaatgtttgttggggct
tcacctgatgctagattagtttctccatggatgggagatcgtactcctcgttcggctggt
atgttattcggtacagctagtggtgcttctccttgggactatgcgtctccgtctccagtt
ccaatacgagcctctggagcatcaataaaatcttcaagctctagatatggtcggacatct
catcaagttagcttttcaagggaaagttcagaatcatttgaggatgaaggagataagacg
ggtcttgcagaagaacacaattacgagattacagaaagtatgcgcttggagatggagtac
aattcagaccgtgcatggtatgatagagaagaaggaaacaccatgttagatgcggatagt
tcatcatttttcctcggggatgaagcttcattccaaaagaaagaagtagatttggccaaa
agactggttcgaagagatgggactagaatgtcgcttgctcagagcaaaaagttatctcag
cttactgctgataatgctcagtgggaagatcggcagctgttgagatctggagctgttaga
ggtactaaggtgcaaactgagtttgtgtatgaggatgaacgcaaggtgattcttcttgta
catgatacaaaacctccattcttggatggcagaattgttttcaccaaacaagcagagcca
atcatgcccataaaagatcatacatcggacatggctataatttcgcgcaaaggatctaca
ctagttaggggaattcatgagaagcaaagcatgaataagtcacgccaacgattttgggag
cttgcaggctctaagcttggtgatatccttggagttgagaaaacagcagaacagattgac
gctgacactacggaagtaggcgaacatggtgaaattgattttaaggaagatgccaaattt
gcacagcatttgaagaagggggaagctgcaagtgaatttgctaagtccaaaagcatagca
gagcagcgacaatacttgcccatatattcagtgcgagatgagttactgcaggtgattcga
gaaaatcagatagttgttgttgtgggtgaaactggctctggaaaaacaactcaacttaca
cagtatcttcatgaagatggatacactaaaaatggtgtagttggttgcacccaacctagg
cgtgtggctgccatgagtgttgcaaaaagagttagtgaagagatggagactgagttgggt
gataaagttggctatgccatacgttttgaagatgtgactgggccaaacaccataattaag
tatatgactgatggagttctccttcgtgaaacattgaaggatgctgatcttgacaagtat
cgtgttattgtaatggatgaagcacatgagagatcactgagcacagatgtgctttttgga
atactgaaaaaggtggctgcccagcgccgtgatttcaagcttattgtgacatctgcaact
ttaaatgcacagaaattttcaaatttctttggaagtgtgccaatatttcacatccctggt
agaacatttcctgtcaatattttgtacagtaagactccttgtgaggattatgttgaagct
gctgtgaagcaggccatgactattcacatcaccagccccccaggtgacatcctcatcttc
atgactggccaagatgagattgaggcagcttgttatgcccttgcagaacgaatagaacag
ctcatctcctccactaggaaaggggtgtctaaacttctgatactcccaatatactcccag
ttgcctgctgatttgcaagcaaagatattccagaaggctgaagatggaactcgcaaatgc
attgttgccaccaacattgctgagacatccttgactgtagatggaatcttttatgttatt
gacactggttatggtaaaatgaaagtctataactctaagatgggtatggatgctcttcaa
gttttccctgtcagtcgtgctgctgctgaccagcgtgcaggacgtgctggtagaactggg
ccaggccaatgttttaggttgtatacagagagcgcttacttaaatgagatgctgcctgct
cctgtacctgagatacagaggaccaaccttggcaatgtggtgttgctgctcaagtctctt
aaaattgagaacttgctagattttgatttcatggatccaccaccgcaggaaaatatcctt
aattctatgtaccagttatgggtcctgggggcacttaactgtgttgggggcttgactgac
attggatggaaaatggtagagttcccattggattccccacttgccaagatgctgttgacg
ggtgaacggctacaatgcatagacgaggttttgaccattgtttcaatgctttcagtccca
tcagtgtttttccgaccgaaggatagagcagaagagagtgacgcagcaagggaaaaattt
tttgtaccagaatctgatcacttaacattgctgaatgtttaccagcagtggaaagctaat
cagtatcgaggagactggtgtaatgaccattttctgcatgttaaagggttaaggaaagct
agagaggtgagatctcagctattagatattctcaagacactgaaaatcccgctaacatcc
tgtggatatgattgggatgttgtaaggaaagctatatgttctgcatactttcacaacgct
gcaagattaaagggtgttggggagtatgttaattgcaggaatggaatgccatgccatttg
cacccaagcagtgctctttatggtttgggttatacaccagagtatgttgtttatcatgaa
ttgattttgacaacaaaggagtacatgcagtacgttacagcagtggagccacggtggctg
gctgaactaggtcccatgttcttttctgtgaaggagtcagatacaacattgttggactgt
aagaaaagacagagggaggagaaaactgccatgcaggaggaaaaggaaaatttgaggaag
gagcaagccgaggcaaagagagaaagcaaggagaagaagagacagaagagagcaaagtgg
cagcagcaagtttcactgcctgggttgcgacagggttcttctacttatctaagaccgaag
aagttcggtttgtaa
DBGET
integrated database retrieval system
