Theobroma cacao (cacao): 18593275
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Entry
18593275 CDS
T02994
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18593275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18593275
Enzymes [BR:
tcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
18593275
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18593275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
18593275
NCBI-ProteinID:
XP_017979507
UniProt:
A0AB32WJG2
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Position
7:737089..741312
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AA seq
726 aa
AA seq
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MNTTKHWPKRALILSRVLSRAFFSNTSTSASPSPTFPLKHVTRSNFDSALVELRSHVRAA
DFVAIDLEMTGVTSAPWRESFEFDRFDIRYLKVKDSAEKFAVIQFGVCPFRWDSLKQSFI
AHPHNFFVFPRQEIPLDGPSNEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSRGQEDEAR
RRLKSLYKEQLTNSSHNLRETMDVPLVRVADVLFTERMKKRLSEWRDELLQNRSRGPQDQ
GASNDLNQQFQTVFFKMRPALSLNGFTSHQLSLIRMVTRKHFKDLVYVRFNGESSSQEFV
VFTDSESDKDRLVEEVKNEHYRRAETMIHAAVGFRHVIDLLSSENKLIVGHNCILDIAHI
HSKFLGPLPLTAEEFVSCVNKYFPNIIDTKILLNADNILQQRMKKSSTSLSSAFSLLCPE
IAHGFESKVQSSQPCVKVEVHVDEMRSPDWNSGAKHEAGYDAFMTGCVFAQVCSHLGIDF
QLYSTSENLVQNEKLQKHMNLLYLSWINGDVIDLRTGSRTAEFLGSNILRKRFPRILYEN
IVLIWGFPSKLKPSVIRECICKTLGPTSVISIYRMDQTAVFVQFSKAELVSDFLILKESL
ERSDDAISVLHPLSQLLEGGNTRAASYETYKDICESPVSELLFADQAEAVGIKWKTKLLP
SDVVESQEDNHFHLENALDHTPETVEKSKIRKTEDVVNDSSNKQLTCDEIIDTLLKVEKI
RRTSNL
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccacaaaacactggcccaagagggccttaatcctctcacgtgtcctatctcgt
gccttcttctccaacaccagcaccagcgcttccccttcgccgacgttccctctaaagcac
gtgaccagatccaacttcgactcggccctcgttgagctccgttcgcacgtgcgagcagcc
gacttcgtggccatcgacttggaaatgacgggggtcaccagcgcgccatggcgggaatcg
ttcgagtttgaccggttcgatattcggtatctaaaagtcaaagattccgccgagaaattc
gctgttattcagttcggtgtttgcccttttcgttgggactcgcttaagcaatcgttcatt
gctcacccgcacaatttctttgtatttcctcgtcaagagattccacttgatgggccatct
aatgaattcctctgccagacgacgtcaatggattttttggctaaataccagtttgatttc
aatgcctgcatacatgaaggagtatcttacttatccagaggacaagaagatgaggcccga
agacgattaaaatcactttataaagagcagttaacgaattcatcacataatttaagagag
actatggatgtacccttggtcagagtggcagatgttctcttcactgaaagaatgaagaaa
agattgagtgaatggcgtgatgagttgttacagaataggagtagagggcctcaagatcaa
ggggcttcaaatgacttgaatcaacaatttcaaacagttttctttaagatgcgtcctgct
cttagtttgaatggattcacttctcatcaactcagtctgatacgaatggtcacaaggaag
catttcaaagatcttgtttatgttcgtttcaatggtgaaagttcttcacaagaattcgtg
gtttttacagattcagagagtgataaggacagacttgtggaggaggtgaagaatgagcat
tacagaagggcagaaacgatgatccatgctgcagtggggttccgtcatgtgattgatcta
ctttcctcggaaaataagttgattgttggtcacaattgcatcctggatattgcccacata
cacagcaaattcctaggtcctcttcctttaactgctgaagaatttgtctcctgtgttaac
aagtacttcccaaatatcattgacaccaaaatactattgaatgctgacaacatactacag
caacggatgaagaaatcaagcacatcattgtcctcagctttttccttattatgcccagaa
attgctcatgggtttgaaagtaaagttcagtcttctcagccatgtgttaaagttgaggtc
catgtggatgaaatgaggtcccctgattggaactctggagccaagcatgaggctggctac
gatgcttttatgacaggctgtgtgtttgctcaggtctgtagtcatctaggcattgatttt
caactttattcaacttctgaaaatctggtccagaatgaaaagctccagaagcacatgaac
cttctatatctgagttggattaatggagatgttattgatctaaggacaggtagcaggact
gcagaatttttgggttctaatatcctcagaaagcggtttccacggattttatatgagaac
attgttttaatctggggattcccatctaaactgaaaccaagcgtgataagagagtgcatc
tgcaaaacccttggccctacttctgttatttccatctaccgaatggatcaaactgcagtg
tttgttcagttcagcaaggcagaattggtctcagactttctgattttgaaggaaagccta
gaacgaagtgatgatgcgatttccgttctgcatcctctttcacaacttttggaaggtgga
aatactcgtgctgctagttatgaaacatataaagatatctgcgaatcacctgtctcagaa
ttgttgttcgcagatcaagcagaggctgtaggtatcaaatggaagaccaaattgttgccg
tcggatgtagtggagagccaagaggataatcatttccatttagaaaatgcactggatcat
actccagagacagttgaaaaatccaagataagaaagacagaggatgtagtaaacgattca
tcaaataagcagttgacatgcgatgagatcatcgatactcttcttaaagtcgaaaagatt
agaagaacctctaatttgtaa
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