KEGG   Theobroma cacao (cacao): 18594142
Entry
18594142          CDS       T02994                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18594142
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcc03019]
    18594142
   03041 Spliceosome [BR:tcc03041]
    18594142
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     18594142
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     18594142
Spliceosome [BR:tcc03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    18594142
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 18594142
NCBI-ProteinID: XP_007021676
UniProt: A0AB32UY51
LinkDB
Position
7:complement(6269368..6272566)
AA seq 429 aa
MQGMDPTKKRKLDENGIVSTQSEPDPITKLTPQDGRKLIERFSVDQLLDILQDAVSRHVD
VLAAVRSVADQDPAQRKLFIRGLGWDTTTDGLRSLFSVYGELEEAVVILDKATGKSKGYG
FVTFKHVDGALLALKEPSKKIDGRVTVTQLAAAGNSGTNNNPVDVHMRKIYVANVPYDMP
ADKLLGHFAQYGEIEEGPLGFDKQTGKSRGFALFVYKTAEGAQAALVEPVKNIDGRQMNC
KLAIEGKKGKPGQDGMMQSGGGAPGNAEMGIGGHGGGYGGPGGPGGLGGYGGYSAGLQGP
PGPMGQPHHLNSSGVGVGALSGSGGGAGSGGYGSGLGGLYGGYGAPGSTGYGLSGAGAGS
GLTGAGGGSSLYRLPPSSVGMPTGGYPESAHYSLSSSSAFPSQHHQGAGTSPVPRVPPGG
MYPNGPPFY
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgcaaggcatggatccaacgaagaaaaggaagctggatgaaaacgggatcgtttcaacc
caatcggaacccgacccgatcaccaaactaaccccacaagacggccgcaaactaatcgag
cgattctcggtcgaccaactcctcgacatcctccaagacgccgtgtctcgccacgtggac
gtccttgctgctgttcgatctgtagccgaccaagacccggctcaacggaagctctttatc
cgcggcttgggttgggatactaccactgacggcctccgttcacttttttccgtctatggg
gaactcgaggaagcggttgttattctcgacaaggccaccgggaagtcgaaagggtatgga
ttcgttacgttcaagcacgtcgatggtgctttgcttgctctcaaagaacccagtaagaaa
atcgacgggagagtcacggtgacgcagttggcggccgcggggaattcggggactaataat
aaccctgtggatgttcatatgagaaagatttatgtagccaatgtgccgtacgatatgccg
gctgataagttattgggtcattttgctcagtatggggaaatagaagagggtcctttgggg
ttcgataagcagaccgggaaatcaaggggatttgctctttttgtttataagacggcggaa
ggggctcaggcggcattggtggagccagtgaagaacattgatgggagacagatgaattgt
aagttggctattgaagggaaaaaggggaagccgggacaagatgggatgatgcaaagtggg
ggtggcgctccaggcaatgctgagatggggattggagggcatgggggaggatatggtggg
cctggtggacctggcggtttgggtggttacggtgggtattctgctgggttgcaagggccg
ccgggtccaatgggccagcctcatcacttgaattcatcaggagttggagtgggagctttg
agtgggagtggaggaggtgctggtagtggggggtatggttctgggcttggtgggctgtat
ggtgggtatggtgctcctggttcaactggctatgggttaagtggtgctggtgcggggagt
gggttgactggtgctggtggagggtcttcgttgtataggttgccgccaagttctgttggg
atgccaacaggtggatatccggagagtgctcattatagcttgtcttcgtcatctgctttc
cctagtcagcatcaccaaggagctgggacatcccctgtgccaagagttccacctggtgga
atgtatccaaatggaccacctttctactga

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