Theobroma cacao (cacao): 18594595
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Entry
18594595 CDS
T02994
Name
(RefSeq) uncharacterized LOC18594595
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18594595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18594595
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18594595
mRNA degradation factors
5'-3' decay
Decapping complex
18594595
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
18594595
NCBI-ProteinID:
XP_017979836
LinkDB
All DBs
Position
7:10283458..10288206
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AA seq
646 aa
AA seq
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MQNKQVRLLDENIPGKSVVEKVFENALSAKFKGKVMFETTPRKEPGESREKEKRDHKHNK
SQLRKNKFQICSHKQGTVAQTTVVVEYMAAAIVAKQATWMRKVPLHFGMPQTKPTELGRV
RSLYTLLRTSVLNNMLQQQSSHQNGLIPPQLMPQLQSHQQSLRHLVQPSFGLLSGIRSQL
FNPHLSPSSPLMNKFEAMLGLGDLRDQRPNSAQRSRQNPRFSQQGFDSSGLKSDIGWPQF
RSKYMSTDEIEGILRMQLAATHSNDPYVDDYYHQACLARNYAGAKLRHHFCPTHLRDLPP
RARANTEPHAFLQVDALGRVPFSSIRRPRPLLEVDPPNSSAVSNNEQKVSDMPLEQEPML
VAKVTIEDGLCLLLDVDDIDRFLQFNQLQDGGAQLRQRRQVLLEGLAASLQLVDPHGKNG
HTDELAHKDDFVFLRIVSLPKGRKLLARYLQLLFPSGELMQVVCMAICHHLRFLFGGLPS
DPGAAETTNNLAMVVSSCVHGMDLRALSVCLAAVVCSSEQPPLRPVGSPAGDGASLILKS
VLDRATKLMIDFRAADNYNMTNQSLWKASFDEFFNLLTKYCVNKYDTVMQSLRMQVKPNM
AIGKSDATRAFKREMPVDLLHACLPHINAQQKKLIWDLSQRSMLVE
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacaaacaggtgagattgttggatgagaatattccaggtaaaagtgttgtggag
aaagtctttgaaaatgctttgagtgcaaaattcaaaggcaaagtcatgtttgagacaaca
ccaagaaaggaacctggtgagtcaagggagaaagaaaagagagatcataaacacaacaag
tctcagcttaggaagaacaagtttcagatttgttcacacaagcaaggaacagtagcacaa
actactgttgtagttgagtatatggcagctgctatagttgcaaagcaagccacatggatg
aggaaagtacccctccactttggaatgcctcagacaaaaccaactgagctaggcagagtt
aggagcttatatactttactcagaacgagtgttttaaacaatatgttgcaacaacagtca
tctcatcaaaacggtttgattccaccacaattaatgccacagctgcagtcgcaccaacag
agtcttcgacatcttgttcagccatcgtttggccttttgtcagggatacggtcgcaacta
tttaatcctcatctttccccatcttctcctctaatgaacaagtttgaagctatgcttggt
cttggtgatctgagagatcaaagaccgaactcagctcaaagaagcaggcagaatccacga
ttttctcagcagggctttgatagcagtggactcaagagtgatattggatggcctcagttt
agatccaaatacatgtctactgatgagattgagggcattcttagaatgcagctcgctgcg
actcacagtaacgacccttacgtggatgattattaccaccaggcttgtcttgctagaaac
tatgctggggcgaagttgagacatcatttttgcccaactcatcttagggatcttcctccc
cgagcacgtgctaataccgagccacatgcgtttctccaggttgatgctcttggaagggtt
cctttctcttcgattcgcaggcctcgccctcttcttgaagttgaccctccaaattcatct
gctgtcagcaacaatgaacagaaagtttctgatatgcccctggaacaggaaccaatgctt
gttgctaaagttacaatcgaggatggtctatgccttcttcttgatgtagatgatattgac
cggtttttacagtttaatcagttgcaggatggtggagcacagctcagacaaagacgacag
gttttgttggaaggcctggctgcatcacttcaattggttgatccacatggcaagaatggt
cacacagatgagcttgctcataaggacgattttgtatttttacggatagtttcccttccc
aaaggccggaagctgctggcaaggtaccttcagcttctttttcctagtggtgagcttatg
caagttgtctgcatggccatatgccatcatttaaggttcttgtttggaggccttccctct
gatccaggagcagcagaaactacaaataaccttgcaatggttgtttcctcctgtgttcat
ggcatggatcttcgtgcacttagtgtctgtcttgcagctgtggtttgttcctcagagcag
ccccctcttcgtccggttggaagtcctgctggagatggggcatctctaattctgaagtct
gtccttgatagggcaacgaaactcatgattgattttagagctgctgacaattataatatg
accaatcagtccctttggaaggcctcatttgatgaattctttaaccttcttaccaagtat
tgtgtaaacaaatatgatactgtgatgcagtccttgcgtatgcaggtcaaaccaaatatg
gcaattggtaagtcagatgctaccagggcttttaaaagggaaatgccggttgatctttta
catgcatgtttaccccacattaatgctcagcagaaaaagctgatatgggatctctctcag
cggtctatgcttgtagaatag
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